Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq456 150 4e-31 seq17 127 5e-24 seq8 100 7e-16 seq342 84.2 5e-11 >seq456 Length=1409724 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 1113175 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGG 1113231 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| || || ||||| || || Sbjct 1113232 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCAT 1113289 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 1113290 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 1113349 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | ||||| ||| |||| ||||| || || ||||| || || || | || ||| Sbjct 1113350 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1113404 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1113414 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1113471 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| || || ||||| || ||||| || ||||||| Sbjct 1113472 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1113531 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 1113532 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1113591 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 1113592 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1113632 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1113642 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1113699 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| || || ||||| || ||||| || ||||||| Sbjct 1113700 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1113759 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 1113760 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1113819 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 1113820 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1113860 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1113870 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1113927 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| || || ||||| || ||||| || ||||||| Sbjct 1113928 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1113987 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 1113988 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1114047 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 1114048 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1114088 Score = 141 bits (156), Expect = 2e-28 Identities = 158/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1114098 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1114155 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| || || ||||| || ||||| || ||||||| Sbjct 1114156 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1114215 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 1114216 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1114275 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| || || || || || ||| Sbjct 1114276 TCCAGAAAGAGTCGACTCTCCACCTGGTT 1114304 >seq17 Length=4663558 Score = 127 bits (140), Expect = 5e-24 Identities = 159/217 (73%), Gaps = 16/217 (7%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || | ||||| || || |||||||| |||||||| |||| Sbjct 4172745 CAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCAAGC--- 4172689 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAA---------GAAGGAATCCCT 178031 |||||||||||||||||||| ||||| ||||||||| || || ||||| Sbjct 4172688 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATCCCC 4172629 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || |||||||| | | ||||| || || |||||||| |||||||| | || || | Sbjct 4172628 CCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCT 4172569 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || ||| |||| || ||||| || ||||| |||| Sbjct 4172568 GACTACAACATCCAGAAGGAATCCACTCTGCA-CTTG 4172533 >seq8 Length=5331620 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || | ||| || | ||| | |||| ||| |||| || || Sbjct 5215582 CAGATTTTCGTGAAAACCCTTATAGGGAAGATTATCCCTCTCGTGGTTGAAACCTTGGAT 5215641 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || |||||| |||| || |||||||| | ||| || ||||| Sbjct 5215642 ACAATAAGAAATGTAAAGGCCAAGATTTAGGATAAGGAAGGAATTCTTCCCGATCAGCAG 5215701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||| | || || || |||||||| | ||| | | || || |||| Sbjct 5215702 AGACTGATCTTGGCCAGCAAGCAACTGCAAGATGGATGTACTTTGTCTGACTACCACGTT 5215761 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || || || ||| |||||||| Sbjct 5215762 CAAAAGGAGCCCACTCTTCAAACTGTGTTGAGACT 5215796 >seq342 Length=1642288 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||| | | ||||| || |||||||||||||| ||| |||| | Sbjct 1431145 CAGATTTTA-TGAAAACCCATATGGGAAAGACCATCACCCTCGAGGTTGAACCCTCAAAT 1431203 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || | || || ||||| | |||||||| ||||| || ||||| Sbjct 1431204 ACAATAGAAGATGTAAGGGGCAAAATCCAGGATGAGGAAGGAATTCCTCC-GATCAGCAG 1431262 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| |||||| | || || || |||| ||| | ||| ||| | || ||||| Sbjct 1431263 GAACTGATCTTCAGGAGCAAGCAACTGGAAGGTGGGCGTACT-TTGTCCCCTACAACGTT 1431321 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| || | || |||||||| || |||||||| Sbjct 1431322 CCAAAGGAGACCACTCTGCATCTCGTGTTGAGACT 1431356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202474750263598