Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq456 150 4e-31
seq17 127 5e-24
seq8 100 7e-16
seq342 84.2 5e-11
>seq456
Length=1409724
Score = 150 bits (166), Expect = 4e-31
Identities = 176/235 (75%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || |||||||| || || || || || || |||||||| ||||
Sbjct 1113175 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGG 1113231
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| ||||||||||||| || || ||||| || || ||||| || ||
Sbjct 1113232 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCAT 1113289
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||| || |||||||| | || ||||| || || || ||||| |||||||| | |||||
Sbjct 1113290 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 1113349
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| | ||||| ||| |||| ||||| || || ||||| || || || | || |||
Sbjct 1113350 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1113404
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 1113414 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1113471
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| || || ||||| || ||||| || |||||||
Sbjct 1113472 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1113531
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | |||||| | ||||| |||
Sbjct 1113532 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1113591
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || || | || |||
Sbjct 1113592 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1113632
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 1113642 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1113699
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| || || ||||| || ||||| || |||||||
Sbjct 1113700 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1113759
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | |||||| | ||||| |||
Sbjct 1113760 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1113819
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || || | || |||
Sbjct 1113820 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1113860
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 1113870 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1113927
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| || || ||||| || ||||| || |||||||
Sbjct 1113928 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1113987
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | |||||| | ||||| |||
Sbjct 1113988 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1114047
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || || | || |||
Sbjct 1114048 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 1114088
Score = 141 bits (156), Expect = 2e-28
Identities = 158/209 (76%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 1114098 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1114155
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| || || ||||| || || ||||| || ||||| || |||||||
Sbjct 1114156 ACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGC 1114215
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | |||||| | ||||| |||
Sbjct 1114216 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 1114275
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| ||||| || || || || || |||
Sbjct 1114276 TCCAGAAAGAGTCGACTCTCCACCTGGTT 1114304
>seq17
Length=4663558
Score = 127 bits (140), Expect = 5e-24
Identities = 159/217 (73%), Gaps = 16/217 (7%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || |||||||| || | ||||| || || |||||||| |||||||| ||||
Sbjct 4172745 CAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACCCTGGAGGTGGAGCCAAGC--- 4172689
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAA---------GAAGGAATCCCT 178031
|||||||||||||||||||| ||||| ||||||||| || || |||||
Sbjct 4172688 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAACAGGACAAGGAGGGCATCCCC 4172629
Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091
|| |||||||| | | ||||| || || |||||||| |||||||| | || || |
Sbjct 4172628 CCCGACCAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCT 4172569
Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| || ||| |||| || ||||| || ||||| ||||
Sbjct 4172568 GACTACAACATCCAGAAGGAATCCACTCTGCA-CTTG 4172533
>seq8
Length=5331620
Score = 100 bits (110), Expect = 7e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| || | ||| || | ||| | |||| ||| |||| || ||
Sbjct 5215582 CAGATTTTCGTGAAAACCCTTATAGGGAAGATTATCCCTCTCGTGGTTGAAACCTTGGAT 5215641
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || |||||| |||| || |||||||| | ||| || |||||
Sbjct 5215642 ACAATAAGAAATGTAAAGGCCAAGATTTAGGATAAGGAAGGAATTCTTCCCGATCAGCAG 5215701
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| ||| | || || || |||||||| | ||| | | || || ||||
Sbjct 5215702 AGACTGATCTTGGCCAGCAAGCAACTGCAAGATGGATGTACTTTGTCTGACTACCACGTT 5215761
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || | || || || ||| ||||||||
Sbjct 5215762 CAAAAGGAGCCCACTCTTCAAACTGTGTTGAGACT 5215796
>seq342
Length=1642288
Score = 84.2 bits (92), Expect = 5e-11
Identities = 150/215 (70%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| ||||||| | | ||||| || |||||||||||||| ||| |||| |
Sbjct 1431145 CAGATTTTA-TGAAAACCCATATGGGAAAGACCATCACCCTCGAGGTTGAACCCTCAAAT 1431203
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || | || | || || ||||| | |||||||| ||||| || |||||
Sbjct 1431204 ACAATAGAAGATGTAAGGGGCAAAATCCAGGATGAGGAAGGAATTCCTCC-GATCAGCAG 1431262
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| |||||| | || || || |||| ||| | ||| ||| | || |||||
Sbjct 1431263 GAACTGATCTTCAGGAGCAAGCAACTGGAAGGTGGGCGTACT-TTGTCCCCTACAACGTT 1431321
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
| ||| || | || |||||||| || ||||||||
Sbjct 1431322 CCAAAGGAGACCACTCTGCATCTCGTGTTGAGACT 1431356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202474750263598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |