Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq54 89.7 5e-13
seq61 87.8 2e-12
>seq54
Length=5886867
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||||||||| || ||||| || | || |||||| || |||||||
Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || || || |||| || || |
Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062
Query 17106 CGATTAATCGTTCG 17119
| | | ||||||
Sbjct 1575063 CCACAACCCGTTCG 1575076
>seq61
Length=5536230
Score = 87.8 bits (96), Expect = 2e-12
Identities = 265/406 (65%), Gaps = 4/406 (1%)
Strand=Plus/Minus
Query 16927 CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986
||| || ||| |||| |||||||| ||||||||||| || || || || |||| ||
Sbjct 436414 CTCTGAAGGTTTATGGACCAGATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACC 436355
Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046
||| ||||||| | | |||| | |||| || | || |||||| | | | ||
Sbjct 436354 CTCACCTCTGCTAAGAGGTTCACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTG 436295
Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106
| ||| |||||| | | || |||| |||| || || || | || ||||| ||
Sbjct 436294 GAGCCAGAATATCCACACAGAAGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGC 436235
Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166
| | ||||| | || | || ||||||| | |||||| | |||| || ||
Sbjct 436234 CACAACCCGTTCCCCATAGGCAGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGC 436175
Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGG-CCTTAA-ATAATTTCTCTTTTTCCTGT 17224
| | |||| |||| |||||| | |||| || || | | ||| ||| | |
Sbjct 436174 CTCCTTCTTTCCGCAAGGCATCGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGC 436115
Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284
| || | ||| | || |||||||| || || |||||||| || || |||| ||||||
Sbjct 436114 A--TCTTTAATAGAAGTGTCGATGAGAAGACTATACATTTCAGAATGGTTGTTTTCCATG 436057
Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTT 17330
|| | || || || | || || || ||||| || |||||||
Sbjct 436056 GCAGTTTGGAAGCCATGCAAACAGCGAGCTTCTCTAATCTGAACTT 436011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517470627050520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |