Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq54 89.7 5e-13 seq61 87.8 2e-12 >seq54 Length=5886867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || ||||| || | || |||||| || ||||||| Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || |||| || || | Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062 Query 17106 CGATTAATCGTTCG 17119 | | | |||||| Sbjct 1575063 CCACAACCCGTTCG 1575076 >seq61 Length=5536230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 265/406 (65%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 16927 CTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986 ||| || ||| |||| |||||||| ||||||||||| || || || || |||| || Sbjct 436414 CTCTGAAGGTTTATGGACCAGATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACC 436355 Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046 ||| ||||||| | | |||| | |||| || | || |||||| | | | || Sbjct 436354 CTCACCTCTGCTAAGAGGTTCACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTG 436295 Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 | ||| |||||| | | || |||| |||| || || || | || ||||| || Sbjct 436294 GAGCCAGAATATCCACACAGAAGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGC 436235 Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 | | ||||| | || | || ||||||| | |||||| | |||| || || Sbjct 436234 CACAACCCGTTCCCCATAGGCAGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGC 436175 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGG-CCTTAA-ATAATTTCTCTTTTTCCTGT 17224 | | |||| |||| |||||| | |||| || || | | ||| ||| | | Sbjct 436174 CTCCTTCTTTCCGCAAGGCATCGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGC 436115 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 | || | ||| | || |||||||| || || |||||||| || || |||| |||||| Sbjct 436114 A--TCTTTAATAGAAGTGTCGATGAGAAGACTATACATTTCAGAATGGTTGTTTTCCATG 436057 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTT 17330 || | || || || | || || || ||||| || ||||||| Sbjct 436056 GCAGTTTGGAAGCCATGCAAACAGCGAGCTTCTCTAATCTGAACTT 436011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517470627050520