Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq32 527 4e-145
seq483 354 6e-93
seq13 345 3e-90
seq347 188 5e-43
seq170 138 8e-28
seq185 86.0 5e-12
>seq32
Length=10841312
Score = 527 bits (584), Expect = 4e-145
Identities = 456/565 (81%), Gaps = 0/565 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||||||||||||||||||||||||||||| | |||||| || || ||||
Sbjct 10199409 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 10199468
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
||||||||||| ||| |||||| || |||||| |||||||| | ||||| ||||||||
Sbjct 10199469 CAGAAAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAA 10199528
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| ||||||| |||||| || ||||| ||||| |||||||| ||| |||||| || ||
Sbjct 10199529 AAAATGTGTCACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTG 10199588
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| |||||||||| ||||| |||||||| ||||| | |||||| |||||||| ||||
Sbjct 10199589 CTTTGTTCATAGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTT 10199648
Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267
|||||||||||||||| ||||| |||||||||| |||||||| | ||| || || | ||
Sbjct 10199649 TATTTGCTAATTCTGGTTGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAA 10199708
Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327
||||||||| |||||| | ||||| || || ||||||| || | ||||||||| | |
Sbjct 10199709 AATGAGCTCCTTGTGGAGGTTCCTTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCT 10199768
Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387
||||||| || |||||||||||||| |||||||| ||||| ||||||||||||| ||||
Sbjct 10199769 TTAAAGGTCGATTCTTCTCAGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAAT 10199828
Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447
|||||||| || ||| || || || || ||||||||||||||| || || ||||||
Sbjct 10199829 TCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAACTTGAATTCATTCC 10199888
Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507
| || ||||| |||| || || | ||||| ||||||||||| || | |||||
Sbjct 10199889 TGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGAAACAGCGG 10199948
Query 4508 CAATGCAGTTTAGTGCTTGAACCAT 4532
| |||||||| || | |||||||
Sbjct 10199949 CGATGCAGTTGAGCGTGCGAACCAT 10199973
>seq483
Length=1248410
Score = 354 bits (392), Expect = 6e-93
Identities = 415/558 (74%), Gaps = 16/558 (3%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
||| || |||||| |||||||||||||||||||||||||| | || ||| || || ||||
Sbjct 279652 ATTCATCATTCTTATCATATACTTCAAATTTGTACTTAATGCCTTCCTCCTCCTGGACAT 279711
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGG-- 4085
||||||||||| ||| | |||||| |||||||||| ||||| ||||||
Sbjct 279712 CAGAAAGAACACCTGGG---------AGAAGTTTTTATTTCTCTAAATCAATTTCTGGGG 279762
Query 4086 AAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCA 4145
|||||| | ||||| |||||| || ||||| |||| |||||||| ||| |||| | ||
Sbjct 279763 AAAAAATGGGTCACTTTCAAATTCCTGCATAATCCCTGTCACAAATAGTCTAAGGTAGCC 279822
Query 4146 TGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTAC 4205
||| | |||| ||||| ||||| |||||||| ||||| | |||| | ||||| || |
Sbjct 279823 TGGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCTAAACCATATCCTC 279882
Query 4206 TTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAA 4265
|||||||||||||||||| || || || |||||| |||||||| | ||| | || |
Sbjct 279883 TTTATTTGCTAATTCTGGTTGCTCAAAAACTTTTAAGGCATCATCCAGACTTTCGGCAAG 279942
Query 4266 AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTC-CTTGCTGAGAACAACATTAATTCTGC 4324
|||||||||| |||||| | | ||| || || || ||||| || | || || ||||
Sbjct 279943 AAAATGAGCTTCTTGTGGAGGTTTCTTGAGGTCTCTAACTGAGCACTAAATCAACTCTGT 280002
Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384
| |||||||| | |||||||| |||| ||||||| ||||| ||| ||||||||| |
Sbjct 280003 CCTTTAAAGGTAGATTCTTCTCGAGAATAGAGAACCCTGTCTTCCTACTCATAATCACCA 280062
Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCAT 4444
||||||||||| || ||| || || | || |||||||||| ||||| || | ||||
Sbjct 280063 AATTCTGTTTACCTTCTACTGAGGAGGATGTGGTCATTCTTTCGAAATACTTGAGCTCAT 280122
Query 4445 TCAT--AAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTAC 4502
|| | ||| || || ||| || || | ||| | ||| |||| || | ||
Sbjct 280123 TCCTGGAAG--AGGGTCACAGCAGGTCCCCGTTCTTGTGGACACCCCTGTTGTGGGACAC 280180
Query 4503 AGCAACAATGCAGTTTAG 4520
||| | |||||||||||
Sbjct 280181 AGCGAGGATGCAGTTTAG 280198
>seq13
Length=11540666
Score = 345 bits (382), Expect = 3e-90
Identities = 338/432 (78%), Gaps = 3/432 (1%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| || ||| | ||||| ||||||||| | ||||||| ||| || ||||| ||||
Sbjct 6499282 ATTAATCATCCTTTTTATATATTTCAAATTTCCATTTAATACGTTTTTCCTCTTGGACAT 6499341
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
||||||| ||||||| |||||| | ||| ||||||||| | | |||| ||||||||
Sbjct 6499342 CAGAAAGAGCACTTGGGTATTCTGGAAGAAGCTTGTATTTCCCCAAATCAGTTTCTGGAA 6499401
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
||| ||||| |||||| || ||||||||||| |||||| | ||||| |||| || ||
Sbjct 6499402 GAAATGTGTCGTTTTCAAATTCCTGCATGATCCTTGTCACAGATAGTTTGAGATGGCGTG 6499461
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | | ||||| ||| | ||||||| ||||| | ||||||||||||||| ||||
Sbjct 6499462 ATTTGTTTGTGGCTTCCTTACAAGCAGAACTGCCTCCCACTATCCAGACCATGTCCACTT 6499521
Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267
| |||| ||||||||| |||| |||||||||| |||||||| | ||| || |||| ||
Sbjct 6499522 TCTTTGTTAATTCTGGTTGTTAAATAAGTTTTAAGGCATCATCCAGACTTTTGGCTAGAA 6499581
Query 4268 AATGAGC-TCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326
||||||| ||| |||||| | ||||| ||||| | ||||||| | |||||||||| |
Sbjct 6499582 AATGAGCATCT-TGTGGAGGTTCCTTGAGTTCTCTACTGAGAAGCAAATTAATTCTGTCC 6499640
Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386
|||||||| | |||||||| |||| |||| || ||||| |||| |||||||| ||
Sbjct 6499641 TTTAAAGGTCAGTTCTTCT-GGGAAGAGAGATTCATGTCTTCCTACCTATAATCACAAAT 6499699
Query 4387 TTCTGTTTATCT 4398
||||||||| ||
Sbjct 6499700 TTCTGTTTACCT 6499711
>seq347
Length=1854259
Score = 188 bits (208), Expect = 5e-43
Identities = 187/242 (77%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| ||| | |||| | | |||||||| || |||||||||||||| || | ||| |||
Sbjct 984847 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCATGTGCAGCCCACGGCCACCAGC 984906
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || | |||||| | ||| | | |||||| || || |||
Sbjct 984907 ATCTTCTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTGCGCAGAACCAGGATC 984966
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| |||||||||||||||| || ||||| |||||| |||||
Sbjct 984967 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTTTATCTTCCCTTCAGCACCGACACAG 985026
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| |||| ||| ||||| || ||||| ||||||||||| ||||| || | || || |||
Sbjct 985027 CCCAAGTGGCGGCACTTGGCCTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTG 985086
Query 27171 CG 27172
||
Sbjct 985087 CG 985088
>seq170
Length=3340629
Score = 138 bits (152), Expect = 8e-28
Identities = 106/126 (84%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 2835145 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 2835204
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
||||| |||||||||| |||||||| | ||| || || | ||||||||||| ||||||
Sbjct 2835205 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 2835264
Query 4285 AGCTCC 4290
| |||
Sbjct 2835265 GGTTCC 2835270
Score = 116 bits (128), Expect = 3e-21
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || ||||||| || | ||||||||| | |||||||| || |||||||||||
Sbjct 2842988 CTTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGG 2843047
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 2843048 AATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2843096
Score = 113 bits (124), Expect = 3e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104
|| ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| ||||
Sbjct 2831751 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 2831810
Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164
|| || ||||| ||||| |||||||| ||| |||||| || || | ||||||||||
Sbjct 2831811 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGCTTTGTTCATAGCTTCC 2831870
Query 4165 TT 4166
||
Sbjct 2831871 TT 2831872
Score = 100 bits (110), Expect = 2e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||||||||||||||||||||||||||||| | |||||| || || ||||
Sbjct 2825351 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 2825410
Query 4028 TAGAAAGAACACTTGGATAT 4047
||||||||||| ||| |||
Sbjct 2825411 CAGAAAGAACACCTGGGTAT 2825430
>seq185
Length=3693041
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097
|||||||| || ||||||||||||||||| ||||| || || || | ||| ||||| |||
Sbjct 3386773 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 3386714
Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157
|||| | || || || | || || || || ||| ||||| |||||||| || | |
Sbjct 3386713 CTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTTC 3386654
Query 102158 ACGCC 102162
|| ||
Sbjct 3386653 ACTCC 3386649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361200176541839
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |