Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq32 527 4e-145 seq483 354 6e-93 seq13 345 3e-90 seq347 188 5e-43 seq170 138 8e-28 seq185 86.0 5e-12 >seq32 Length=10841312 Score = 527 bits (584), Expect = 4e-145 Identities = 456/565 (81%), Gaps = 0/565 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||||||||||||||||||||||||||||| | |||||| || || |||| Sbjct 10199409 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 10199468 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 ||||||||||| ||| |||||| || |||||| |||||||| | ||||| |||||||| Sbjct 10199469 CAGAAAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAA 10199528 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| ||||||| |||||| || ||||| ||||| |||||||| ||| |||||| || || Sbjct 10199529 AAAATGTGTCACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTG 10199588 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | |||||||||| ||||| |||||||| ||||| | |||||| |||||||| |||| Sbjct 10199589 CTTTGTTCATAGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTT 10199648 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 |||||||||||||||| ||||| |||||||||| |||||||| | ||| || || | || Sbjct 10199649 TATTTGCTAATTCTGGTTGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAA 10199708 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| |||||| | ||||| || || ||||||| || | ||||||||| | | Sbjct 10199709 AATGAGCTCCTTGTGGAGGTTCCTTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCT 10199768 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| || |||||||||||||| |||||||| ||||| ||||||||||||| |||| Sbjct 10199769 TTAAAGGTCGATTCTTCTCAGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAAT 10199828 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 |||||||| || ||| || || || || ||||||||||||||| || || |||||| Sbjct 10199829 TCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAACTTGAATTCATTCC 10199888 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507 | || ||||| |||| || || | ||||| ||||||||||| || | ||||| Sbjct 10199889 TGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGAAACAGCGG 10199948 Query 4508 CAATGCAGTTTAGTGCTTGAACCAT 4532 | |||||||| || | ||||||| Sbjct 10199949 CGATGCAGTTGAGCGTGCGAACCAT 10199973 >seq483 Length=1248410 Score = 354 bits (392), Expect = 6e-93 Identities = 415/558 (74%), Gaps = 16/558 (3%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 ||| || |||||| |||||||||||||||||||||||||| | || ||| || || |||| Sbjct 279652 ATTCATCATTCTTATCATATACTTCAAATTTGTACTTAATGCCTTCCTCCTCCTGGACAT 279711 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGG-- 4085 ||||||||||| ||| | |||||| |||||||||| ||||| |||||| Sbjct 279712 CAGAAAGAACACCTGGG---------AGAAGTTTTTATTTCTCTAAATCAATTTCTGGGG 279762 Query 4086 AAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCA 4145 |||||| | ||||| |||||| || ||||| |||| |||||||| ||| |||| | || Sbjct 279763 AAAAAATGGGTCACTTTCAAATTCCTGCATAATCCCTGTCACAAATAGTCTAAGGTAGCC 279822 Query 4146 TGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTAC 4205 ||| | |||| ||||| ||||| |||||||| ||||| | |||| | ||||| || | Sbjct 279823 TGGCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCTAAACCATATCCTC 279882 Query 4206 TTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAA 4265 |||||||||||||||||| || || || |||||| |||||||| | ||| | || | Sbjct 279883 TTTATTTGCTAATTCTGGTTGCTCAAAAACTTTTAAGGCATCATCCAGACTTTCGGCAAG 279942 Query 4266 AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTC-CTTGCTGAGAACAACATTAATTCTGC 4324 |||||||||| |||||| | | ||| || || || ||||| || | || || |||| Sbjct 279943 AAAATGAGCTTCTTGTGGAGGTTTCTTGAGGTCTCTAACTGAGCACTAAATCAACTCTGT 280002 Query 4325 CTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 | |||||||| | |||||||| |||| ||||||| ||||| ||| ||||||||| | Sbjct 280003 CCTTTAAAGGTAGATTCTTCTCGAGAATAGAGAACCCTGTCTTCCTACTCATAATCACCA 280062 Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCAT 4444 ||||||||||| || ||| || || | || |||||||||| ||||| || | |||| Sbjct 280063 AATTCTGTTTACCTTCTACTGAGGAGGATGTGGTCATTCTTTCGAAATACTTGAGCTCAT 280122 Query 4445 TCAT--AAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTAC 4502 || | ||| || || ||| || || | ||| | ||| |||| || | || Sbjct 280123 TCCTGGAAG--AGGGTCACAGCAGGTCCCCGTTCTTGTGGACACCCCTGTTGTGGGACAC 280180 Query 4503 AGCAACAATGCAGTTTAG 4520 ||| | ||||||||||| Sbjct 280181 AGCGAGGATGCAGTTTAG 280198 >seq13 Length=11540666 Score = 345 bits (382), Expect = 3e-90 Identities = 338/432 (78%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| || ||| | ||||| ||||||||| | ||||||| ||| || ||||| |||| Sbjct 6499282 ATTAATCATCCTTTTTATATATTTCAAATTTCCATTTAATACGTTTTTCCTCTTGGACAT 6499341 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 ||||||| ||||||| |||||| | ||| ||||||||| | | |||| |||||||| Sbjct 6499342 CAGAAAGAGCACTTGGGTATTCTGGAAGAAGCTTGTATTTCCCCAAATCAGTTTCTGGAA 6499401 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||| ||||| |||||| || ||||||||||| |||||| | ||||| |||| || || Sbjct 6499402 GAAATGTGTCGTTTTCAAATTCCTGCATGATCCTTGTCACAGATAGTTTGAGATGGCGTG 6499461 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | ||||| ||| | ||||||| ||||| | ||||||||||||||| |||| Sbjct 6499462 ATTTGTTTGTGGCTTCCTTACAAGCAGAACTGCCTCCCACTATCCAGACCATGTCCACTT 6499521 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 | |||| ||||||||| |||| |||||||||| |||||||| | ||| || |||| || Sbjct 6499522 TCTTTGTTAATTCTGGTTGTTAAATAAGTTTTAAGGCATCATCCAGACTTTTGGCTAGAA 6499581 Query 4268 AATGAGC-TCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 ||||||| ||| |||||| | ||||| ||||| | ||||||| | |||||||||| | Sbjct 6499582 AATGAGCATCT-TGTGGAGGTTCCTTGAGTTCTCTACTGAGAAGCAAATTAATTCTGTCC 6499640 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 |||||||| | |||||||| |||| |||| || ||||| |||| |||||||| || Sbjct 6499641 TTTAAAGGTCAGTTCTTCT-GGGAAGAGAGATTCATGTCTTCCTACCTATAATCACAAAT 6499699 Query 4387 TTCTGTTTATCT 4398 ||||||||| || Sbjct 6499700 TTCTGTTTACCT 6499711 >seq347 Length=1854259 Score = 188 bits (208), Expect = 5e-43 Identities = 187/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || |||||||||||||| || | ||| ||| Sbjct 984847 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCATGTGCAGCCCACGGCCACCAGC 984906 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| | | |||||| || || ||| Sbjct 984907 ATCTTCTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTGCGCAGAACCAGGATC 984966 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| |||||||||||||||| || ||||| |||||| ||||| Sbjct 984967 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTTTATCTTCCCTTCAGCACCGACACAG 985026 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| ||||| || ||||| ||||||||||| ||||| || | || || ||| Sbjct 985027 CCCAAGTGGCGGCACTTGGCCTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTG 985086 Query 27171 CG 27172 || Sbjct 985087 CG 985088 >seq170 Length=3340629 Score = 138 bits (152), Expect = 8e-28 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||||||||||||| Sbjct 2835145 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 2835204 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 ||||| |||||||||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 2835205 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 2835264 Query 4285 AGCTCC 4290 | ||| Sbjct 2835265 GGTTCC 2835270 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || ||||||| || | ||||||||| | |||||||| || ||||||||||| Sbjct 2842988 CTTGAGATCTCTGCTGAGGACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGG 2843047 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 2843048 AATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2843096 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 2831751 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 2831810 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 || || ||||| ||||| |||||||| ||| |||||| || || | |||||||||| Sbjct 2831811 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGCTTTGTTCATAGCTTCC 2831870 Query 4165 TT 4166 || Sbjct 2831871 TT 2831872 Score = 100 bits (110), Expect = 2e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||||||||||||||||||||||||||||| | |||||| || || |||| Sbjct 2825351 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 2825410 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 2825411 CAGAAAGAACACCTGGGTAT 2825430 >seq185 Length=3693041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 |||||||| || ||||||||||||||||| ||||| || || || | ||| ||||| ||| Sbjct 3386773 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 3386714 Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157 |||| | || || || | || || || || ||| ||||| |||||||| || | | Sbjct 3386713 CTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTTC 3386654 Query 102158 ACGCC 102162 || || Sbjct 3386653 ACTCC 3386649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361200176541839