Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq8 327 1e-84
seq185 178 2e-39
seq43 176 5e-39
seq354 102 1e-16
>seq8
Length=10166724
Score = 327 bits (362), Expect = 1e-84
Identities = 561/803 (70%), Gaps = 27/803 (3%)
Strand=Plus/Minus
Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510
|| ||||| || ||| | || ||||| || ||||||||||| ||||| | || ||
Sbjct 6290340 ACCAACATATTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTGGTCTCTCTGGTG 6290281
Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570
|| ||||| ||||| | || ||| |||||||| ||||||| |||| ||||||||
Sbjct 6290280 TTCTGGATTCACTACACTG---TGTGGAATGATTGGGTTTTTGGTCCTTCCATGTGTAAA 6290224
Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630
|| ||| || | | ||||||| | ||||| || |||||| ||||||||||||
Sbjct 6290223 CTCCTCTCTGGGATTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTG 6290164
Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAG 176688
|| ||||| |||| || || ||||| | ||||| ||| || ||| | || |
Sbjct 6290163 ACCATAGACCGGTACCTGGCCATTGTCCACGCTGTGTTTGCCCTTCGAGCCC--GGACTG 6290106
Query 176689 TAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 176748
| || | || | || || |||| |||||| || | |||| | ||||||
Sbjct 6290105 TCACTTTCGGTGTCGTCACAAGTGTTCTCACCTGGGGCCTCGTAGGGCTAGCAGCCCTCC 6290046
Query 176749 CTGAATTTTTCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC-- 176802
|||||||| |||| |||| |||| | || ||| | || || || ||
Sbjct 6290045 CTGAATTTATCTTCCATGTGTCCCAAAAGGAGGCCCAAAAAT----TT--GTCTGCTCAC 6289992
Query 176803 CTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATT 176861
||| |||||||| | | | | || || |||| ||| ||| | | | ||| |
Sbjct 6289991 CTTTTTACCCAGA-AGGCCAAGAAGATAGATGGAAGCGTTTCCAAGCTCTGAGAATGAAT 6289933
Query 176862 ATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGA 176921
|| || ||||| | ||||||||||||| ||| ||||||||||| || |||||| | |
Sbjct 6289932 ATCTTGGGTCTCGCTCTGCCTCTGCTCATCATGATTGTCTGCTACTCTGGAATTATTAAA 6289873
Query 176922 AGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATC 176981
| |||| |||| |||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct 6289872 ACACTGCTGAGATGCCCCAATAAGAAAAAGTACAAGGCCATCCGACTCATTTTTGTCATC 6289813
Query 176982 ATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTT 177041
||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | |||
Sbjct 6289812 ATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACTTGGTCCTCCTTCTCTCTGCTTTT 6289753
Query 177042 CACGCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 177098
|| | | |||||| || | ||| ||| ||||| | ||||| |||| ||
Sbjct 6289752 CAAACGA-TCTTCTTTGAGACAAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATG 6289696
Query 177099 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 177158
| | | ||| | | |||||||||||||| ||||||||||| || |||||||| |||
Sbjct 6289695 CAGGTGACAGAGGTGATTGCCTACACACACTGCTGCATCAACCCTGTCATCTACGCCTTC 6289636
Query 177159 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTAC 177218
|| |||||| ||| | | || || ||||||||||| || | |||||||| || |
Sbjct 6289635 GTCGGGGAGCGGTTCCGGACGCATCTCGGCCACTTCTTCCGCAACCACGTGGCCCCCTGC 6289576
Query 177219 CTCTGCAAGTACATCCCCTTCCT 177241
|| |||| |||| ||| |||||
Sbjct 6289575 CTGAGCAAATACAACCCATTCCT 6289553
Score = 327 bits (362), Expect = 1e-84
Identities = 561/803 (70%), Gaps = 27/803 (3%)
Strand=Plus/Minus
Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624
|| ||||| || ||| | || ||||| || ||||||||||| ||||| | || ||
Sbjct 6290340 ACCAACATATTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTGGTCTCTCTGGTG 6290281
Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684
|| ||||| ||||| | || ||| |||||||| ||||||| |||| ||||||||
Sbjct 6290280 TTCTGGATTCACTACACTG---TGTGGAATGATTGGGTTTTTGGTCCTTCCATGTGTAAA 6290224
Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744
|| ||| || | | ||||||| | ||||| || |||||| ||||||||||||
Sbjct 6290223 CTCCTCTCTGGGATTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTG 6290164
Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAG 9802
|| ||||| |||| || || ||||| | ||||| ||| || ||| | || |
Sbjct 6290163 ACCATAGACCGGTACCTGGCCATTGTCCACGCTGTGTTTGCCCTTCGAGCCC--GGACTG 6290106
Query 9803 TAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 9862
| || | || | || || |||| |||||| || | |||| | ||||||
Sbjct 6290105 TCACTTTCGGTGTCGTCACAAGTGTTCTCACCTGGGGCCTCGTAGGGCTAGCAGCCCTCC 6290046
Query 9863 CTGAATTTTTCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC-- 9916
|||||||| |||| |||| |||| | || ||| | || || || ||
Sbjct 6290045 CTGAATTTATCTTCCATGTGTCCCAAAAGGAGGCCCAAAAAT----TT--GTCTGCTCAC 6289992
Query 9917 CTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATT 9975
||| |||||||| | | | | || || |||| ||| ||| | | | ||| |
Sbjct 6289991 CTTTTTACCCAGA-AGGCCAAGAAGATAGATGGAAGCGTTTCCAAGCTCTGAGAATGAAT 6289933
Query 9976 ATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGA 10035
|| || ||||| | ||||||||||||| ||| ||||||||||| || |||||| | |
Sbjct 6289932 ATCTTGGGTCTCGCTCTGCCTCTGCTCATCATGATTGTCTGCTACTCTGGAATTATTAAA 6289873
Query 10036 AGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATC 10095
| |||| |||| |||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct 6289872 ACACTGCTGAGATGCCCCAATAAGAAAAAGTACAAGGCCATCCGACTCATTTTTGTCATC 6289813
Query 10096 ATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTT 10155
||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | |||
Sbjct 6289812 ATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACTTGGTCCTCCTTCTCTCTGCTTTT 6289753
Query 10156 CACGCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 10212
|| | | |||||| || | ||| ||| ||||| | ||||| |||| ||
Sbjct 6289752 CAAACGA-TCTTCTTTGAGACAAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATG 6289696
Query 10213 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 10272
| | | ||| | | |||||||||||||| ||||||||||| || |||||||| |||
Sbjct 6289695 CAGGTGACAGAGGTGATTGCCTACACACACTGCTGCATCAACCCTGTCATCTACGCCTTC 6289636
Query 10273 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTAC 10332
|| |||||| ||| | | || || ||||||||||| || | |||||||| || |
Sbjct 6289635 GTCGGGGAGCGGTTCCGGACGCATCTCGGCCACTTCTTCCGCAACCACGTGGCCCCCTGC 6289576
Query 10333 CTCTGCAAGTACATCCCCTTCCT 10355
|| |||| |||| ||| |||||
Sbjct 6289575 CTGAGCAAATACAACCCATTCCT 6289553
Score = 100 bits (110), Expect = 3e-16
Identities = 183/263 (70%), Gaps = 14/263 (5%)
Strand=Plus/Minus
Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002
||||||| | |||||||| | |||||||| ||||| |||||| | | || ||| ||||
Sbjct 6203049 AAGAAGAGGCACAAGGCCGTGAGGCTCATTTTTGTGATCATGATTGTTTACTTTCTTTTC 6202990
Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 177062
||| | ||||||||||| ||||| || ||| ||||| || | | ||||| ||||
Sbjct 6202989 TGGGCTCCCTACAACATCGTTCTTCTCCTGAGCACCTTCCA-GGAGTCCTTC--GGCCTG 6202933
Query 177063 CAGTGTGCATTG-AGCAG---TAAC---TTGGACATGGCTCTGCTGATAACAAAAACAGT 177115
| |||| ||||| ||| | ||| || ||| | | ||| | || |
Sbjct 6202932 AA----TAATTGCAGCAGCTCCAACAGGCTAGACCAAGCCATGCAGGTGACAGAGACGCT 6202877
Query 177116 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 177175
| |||||||||||||||||||| | ||||| || ||||| ||||||||||| ||
Sbjct 6202876 TGGGATGACACACTGTTGCATCAACCCCATCATCTATGCCTTCGTCGGGGAGAAGTTCAG 6202817
Query 177176 AAGACACCTGTACCACTTCTTCC 177198
|| |||| | | |||||||
Sbjct 6202816 AAACTACCTCTTGGAGTTCTTCC 6202794
Score = 100 bits (110), Expect = 3e-16
Identities = 183/263 (70%), Gaps = 14/263 (5%)
Strand=Plus/Minus
Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116
||||||| | |||||||| | |||||||| ||||| |||||| | | || ||| ||||
Sbjct 6203049 AAGAAGAGGCACAAGGCCGTGAGGCTCATTTTTGTGATCATGATTGTTTACTTTCTTTTC 6202990
Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 10176
||| | ||||||||||| ||||| || ||| ||||| || | | ||||| ||||
Sbjct 6202989 TGGGCTCCCTACAACATCGTTCTTCTCCTGAGCACCTTCCA-GGAGTCCTTC--GGCCTG 6202933
Query 10177 CAGTGTGCATTG-AGCAG---TAAC---TTGGACATGGCTCTGCTGATAACAAAAACAGT 10229
| |||| ||||| ||| | ||| || ||| | | ||| | || |
Sbjct 6202932 AA----TAATTGCAGCAGCTCCAACAGGCTAGACCAAGCCATGCAGGTGACAGAGACGCT 6202877
Query 10230 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 10289
| |||||||||||||||||||| | ||||| || ||||| ||||||||||| ||
Sbjct 6202876 TGGGATGACACACTGTTGCATCAACCCCATCATCTATGCCTTCGTCGGGGAGAAGTTCAG 6202817
Query 10290 AAGACACCTGTACCACTTCTTCC 10312
|| |||| | | |||||||
Sbjct 6202816 AAACTACCTCTTGGAGTTCTTCC 6202794
>seq185
Length=3693041
Score = 178 bits (196), Expect = 2e-39
Identities = 136/161 (84%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||| || | ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 3389791 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 3389732
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| |||||||||||||| | |||||||||||||||||| ||||| || | ||
Sbjct 3389731 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 3389672
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||||||||||||| ||| ||||| || || ||||||||
Sbjct 3389671 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 3389631
>seq43
Length=9688235
Score = 176 bits (194), Expect = 5e-39
Identities = 135/160 (84%), Gaps = 9/160 (6%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||||| |||||||| ||||||||| || |||||||||||||| |||||||| | |||
Sbjct 9130112 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGCGAGTTCACGTGTTCC 9130171
Query 138142 TT---TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAAC 138198
|| ||| ||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 9130172 TTGACTTCTGGGTCG------TGGTTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAAC 9130225
Query 138199 TGGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||||||| |||| ||| ||||| |||||||||||||
Sbjct 9130226 TGGATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 9130265
Score = 105 bits (116), Expect = 8e-18
Identities = 136/183 (74%), Gaps = 10/183 (5%)
Strand=Plus/Plus
Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356
|||||| ||||| ||||||| |||||| || | |||||| |||||||||||||||||||
Sbjct 9131428 AAAGAAAGTCTTCACCCTGCCGAAGGCTGCTCGGAGCTCTCGGAGCATGTGGGGCAGGCT 9131487
Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGAC---TCACTGTCATATTTGTTGTCGGCCC 138412
|| || || || || ||||| |||| ||||| |||| | | | | ||| |
Sbjct 9131488 GGCTGG-AAAGTGGGTGCAGTTGTCCTCAGACGGGGCACT---CTGGTGGCGGCTGGCTC 9131543
Query 138413 ACACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA--TCT 138470
||||| | |||||| ||||||||||||||||||| | ||| ||||| || |||
Sbjct 9131544 CTACCCCAGTCAGGAGGACCAGGCAACACAGCAGCGCGGGGCTGGGCATGGTGAAGCTCT 9131603
Query 138471 GCC 138473
|||
Sbjct 9131604 GCC 9131606
Score = 104 bits (114), Expect = 3e-17
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
|||| |||||||| | | |||||||| | ||||||||||| |||||||||||||||||
Sbjct 9127894 TCAGATTTTCATCCTCATTGTCATGTACGTTTCTATGTAGTTGATGAAGATGTCAAACTC 9127953
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| ||| | || |||||||
Sbjct 9127954 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 9127988
Score = 87.8 bits (96), Expect = 2e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074
||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 9129037 CTTACTGAATGCACTCTTCACCTGCTCCACTGCCTTGCTCTTATTCTCACAGGGCAGAAA 9129096
Query 138075 TCTGTG 138080
|| |||
Sbjct 9129097 TCGGTG 9129102
>seq354
Length=1792354
Score = 102 bits (112), Expect = 1e-16
Identities = 121/163 (74%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 145729 TGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAG 145788
|| |||||||| || |||| | ||| |||| ||| || | || |||| | ||| || |
Sbjct 161513 TGTATGAAGTCACCTGGCTTCACGCCTGTGATGTGTGCAATCAGGTAGATGAGCCAGGTG 161572
Query 145789 TAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGG 145848
| | || | |||||||||||| ||| |||||||| || | | | |||||||||||
Sbjct 161573 TGGAGAGCCAAGTTGAAGGGCACAGCCAAACCCATGTCTCCTGCCCTCCGGTACAGCTGG 161632
Query 145849 CAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGT 145891
||||| ||||| |||| | |||| ||| |||||| ||||||
Sbjct 161633 CAGGACAGCTCACCGCTCACCACAGAGATCTGGCA-GGGAGGT 161674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589991319999560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |