Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8 327 1e-84 seq185 178 2e-39 seq43 176 5e-39 seq354 102 1e-16 >seq8 Length=10166724 Score = 327 bits (362), Expect = 1e-84 Identities = 561/803 (70%), Gaps = 27/803 (3%) Strand=Plus/Minus Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510 || ||||| || ||| | || ||||| || ||||||||||| ||||| | || || Sbjct 6290340 ACCAACATATTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTGGTCTCTCTGGTG 6290281 Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570 || ||||| ||||| | || ||| |||||||| ||||||| |||| |||||||| Sbjct 6290280 TTCTGGATTCACTACACTG---TGTGGAATGATTGGGTTTTTGGTCCTTCCATGTGTAAA 6290224 Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630 || ||| || | | ||||||| | ||||| || |||||| |||||||||||| Sbjct 6290223 CTCCTCTCTGGGATTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTG 6290164 Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAG 176688 || ||||| |||| || || ||||| | ||||| ||| || ||| | || | Sbjct 6290163 ACCATAGACCGGTACCTGGCCATTGTCCACGCTGTGTTTGCCCTTCGAGCCC--GGACTG 6290106 Query 176689 TAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 176748 | || | || | || || |||| |||||| || | |||| | |||||| Sbjct 6290105 TCACTTTCGGTGTCGTCACAAGTGTTCTCACCTGGGGCCTCGTAGGGCTAGCAGCCCTCC 6290046 Query 176749 CTGAATTTTTCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC-- 176802 |||||||| |||| |||| |||| | || ||| | || || || || Sbjct 6290045 CTGAATTTATCTTCCATGTGTCCCAAAAGGAGGCCCAAAAAT----TT--GTCTGCTCAC 6289992 Query 176803 CTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATT 176861 ||| |||||||| | | | | || || |||| ||| ||| | | | ||| | Sbjct 6289991 CTTTTTACCCAGA-AGGCCAAGAAGATAGATGGAAGCGTTTCCAAGCTCTGAGAATGAAT 6289933 Query 176862 ATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGA 176921 || || ||||| | ||||||||||||| ||| ||||||||||| || |||||| | | Sbjct 6289932 ATCTTGGGTCTCGCTCTGCCTCTGCTCATCATGATTGTCTGCTACTCTGGAATTATTAAA 6289873 Query 176922 AGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATC 176981 | |||| |||| |||||| ||||| ||||||||||||||| | ||||| ||||||||| Sbjct 6289872 ACACTGCTGAGATGCCCCAATAAGAAAAAGTACAAGGCCATCCGACTCATTTTTGTCATC 6289813 Query 176982 ATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTT 177041 ||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | ||| Sbjct 6289812 ATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACTTGGTCCTCCTTCTCTCTGCTTTT 6289753 Query 177042 CACGCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 177098 || | | |||||| || | ||| ||| ||||| | ||||| |||| || Sbjct 6289752 CAAACGA-TCTTCTTTGAGACAAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATG 6289696 Query 177099 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 177158 | | | ||| | | |||||||||||||| ||||||||||| || |||||||| ||| Sbjct 6289695 CAGGTGACAGAGGTGATTGCCTACACACACTGCTGCATCAACCCTGTCATCTACGCCTTC 6289636 Query 177159 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTAC 177218 || |||||| ||| | | || || ||||||||||| || | |||||||| || | Sbjct 6289635 GTCGGGGAGCGGTTCCGGACGCATCTCGGCCACTTCTTCCGCAACCACGTGGCCCCCTGC 6289576 Query 177219 CTCTGCAAGTACATCCCCTTCCT 177241 || |||| |||| ||| ||||| Sbjct 6289575 CTGAGCAAATACAACCCATTCCT 6289553 Score = 327 bits (362), Expect = 1e-84 Identities = 561/803 (70%), Gaps = 27/803 (3%) Strand=Plus/Minus Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624 || ||||| || ||| | || ||||| || ||||||||||| ||||| | || || Sbjct 6290340 ACCAACATATTCCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTGGTCTCTCTGGTG 6290281 Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684 || ||||| ||||| | || ||| |||||||| ||||||| |||| |||||||| Sbjct 6290280 TTCTGGATTCACTACACTG---TGTGGAATGATTGGGTTTTTGGTCCTTCCATGTGTAAA 6290224 Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744 || ||| || | | ||||||| | ||||| || |||||| |||||||||||| Sbjct 6290223 CTCCTCTCTGGGATTTATTACATGGGCTTATACAGTGAGATCTTTTTCATCATCCTGCTG 6290164 Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAG 9802 || ||||| |||| || || ||||| | ||||| ||| || ||| | || | Sbjct 6290163 ACCATAGACCGGTACCTGGCCATTGTCCACGCTGTGTTTGCCCTTCGAGCCC--GGACTG 6290106 Query 9803 TAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 9862 | || | || | || || |||| |||||| || | |||| | |||||| Sbjct 6290105 TCACTTTCGGTGTCGTCACAAGTGTTCTCACCTGGGGCCTCGTAGGGCTAGCAGCCCTCC 6290046 Query 9863 CTGAATTTTTCTTTCATGGACACCAAGATGA----CAATGGTAGGGTTCAGTGTGATC-- 9916 |||||||| |||| |||| |||| | || ||| | || || || || Sbjct 6290045 CTGAATTTATCTTCCATGTGTCCCAAAAGGAGGCCCAAAAAT----TT--GTCTGCTCAC 6289992 Query 9917 CTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATT 9975 ||| |||||||| | | | | || || |||| ||| ||| | | | ||| | Sbjct 6289991 CTTTTTACCCAGA-AGGCCAAGAAGATAGATGGAAGCGTTTCCAAGCTCTGAGAATGAAT 6289933 Query 9976 ATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGA 10035 || || ||||| | ||||||||||||| ||| ||||||||||| || |||||| | | Sbjct 6289932 ATCTTGGGTCTCGCTCTGCCTCTGCTCATCATGATTGTCTGCTACTCTGGAATTATTAAA 6289873 Query 10036 AGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATC 10095 | |||| |||| |||||| ||||| ||||||||||||||| | ||||| ||||||||| Sbjct 6289872 ACACTGCTGAGATGCCCCAATAAGAAAAAGTACAAGGCCATCCGACTCATTTTTGTCATC 6289813 Query 10096 ATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTT 10155 ||||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | ||| Sbjct 6289812 ATGGTGGTCTTTTTCATTTTCTGGACACCCTACAACTTGGTCCTCCTTCTCTCTGCTTTT 6289753 Query 10156 CACGCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 10212 || | | |||||| || | ||| ||| ||||| | ||||| |||| || Sbjct 6289752 CAAACGA-TCTTCTTTGAGACAAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATG 6289696 Query 10213 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 10272 | | | ||| | | |||||||||||||| ||||||||||| || |||||||| ||| Sbjct 6289695 CAGGTGACAGAGGTGATTGCCTACACACACTGCTGCATCAACCCTGTCATCTACGCCTTC 6289636 Query 10273 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTAC 10332 || |||||| ||| | | || || ||||||||||| || | |||||||| || | Sbjct 6289635 GTCGGGGAGCGGTTCCGGACGCATCTCGGCCACTTCTTCCGCAACCACGTGGCCCCCTGC 6289576 Query 10333 CTCTGCAAGTACATCCCCTTCCT 10355 || |||| |||| ||| ||||| Sbjct 6289575 CTGAGCAAATACAACCCATTCCT 6289553 Score = 100 bits (110), Expect = 3e-16 Identities = 183/263 (70%), Gaps = 14/263 (5%) Strand=Plus/Minus Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 ||||||| | |||||||| | |||||||| ||||| |||||| | | || ||| |||| Sbjct 6203049 AAGAAGAGGCACAAGGCCGTGAGGCTCATTTTTGTGATCATGATTGTTTACTTTCTTTTC 6202990 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 177062 ||| | ||||||||||| ||||| || ||| ||||| || | | ||||| |||| Sbjct 6202989 TGGGCTCCCTACAACATCGTTCTTCTCCTGAGCACCTTCCA-GGAGTCCTTC--GGCCTG 6202933 Query 177063 CAGTGTGCATTG-AGCAG---TAAC---TTGGACATGGCTCTGCTGATAACAAAAACAGT 177115 | |||| ||||| ||| | ||| || ||| | | ||| | || | Sbjct 6202932 AA----TAATTGCAGCAGCTCCAACAGGCTAGACCAAGCCATGCAGGTGACAGAGACGCT 6202877 Query 177116 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 177175 | |||||||||||||||||||| | ||||| || ||||| ||||||||||| || Sbjct 6202876 TGGGATGACACACTGTTGCATCAACCCCATCATCTATGCCTTCGTCGGGGAGAAGTTCAG 6202817 Query 177176 AAGACACCTGTACCACTTCTTCC 177198 || |||| | | ||||||| Sbjct 6202816 AAACTACCTCTTGGAGTTCTTCC 6202794 Score = 100 bits (110), Expect = 3e-16 Identities = 183/263 (70%), Gaps = 14/263 (5%) Strand=Plus/Minus Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 ||||||| | |||||||| | |||||||| ||||| |||||| | | || ||| |||| Sbjct 6203049 AAGAAGAGGCACAAGGCCGTGAGGCTCATTTTTGTGATCATGATTGTTTACTTTCTTTTC 6202990 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 10176 ||| | ||||||||||| ||||| || ||| ||||| || | | ||||| |||| Sbjct 6202989 TGGGCTCCCTACAACATCGTTCTTCTCCTGAGCACCTTCCA-GGAGTCCTTC--GGCCTG 6202933 Query 10177 CAGTGTGCATTG-AGCAG---TAAC---TTGGACATGGCTCTGCTGATAACAAAAACAGT 10229 | |||| ||||| ||| | ||| || ||| | | ||| | || | Sbjct 6202932 AA----TAATTGCAGCAGCTCCAACAGGCTAGACCAAGCCATGCAGGTGACAGAGACGCT 6202877 Query 10230 AGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAG 10289 | |||||||||||||||||||| | ||||| || ||||| ||||||||||| || Sbjct 6202876 TGGGATGACACACTGTTGCATCAACCCCATCATCTATGCCTTCGTCGGGGAGAAGTTCAG 6202817 Query 10290 AAGACACCTGTACCACTTCTTCC 10312 || |||| | | ||||||| Sbjct 6202816 AAACTACCTCTTGGAGTTCTTCC 6202794 >seq185 Length=3693041 Score = 178 bits (196), Expect = 2e-39 Identities = 136/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 3389791 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 3389732 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||||||||| | |||||||||||||||||| ||||| || | || Sbjct 3389731 ACGCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 3389672 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || || |||||||| Sbjct 3389671 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 3389631 >seq43 Length=9688235 Score = 176 bits (194), Expect = 5e-39 Identities = 135/160 (84%), Gaps = 9/160 (6%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || |||||||||||||| |||||||| | ||| Sbjct 9130112 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGCGAGTTCACGTGTTCC 9130171 Query 138142 TT---TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAAC 138198 || ||| ||||| |||||||| |||||||||||||||||||||| ||||||| Sbjct 9130172 TTGACTTCTGGGTCG------TGGTTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAAC 9130225 Query 138199 TGGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||| |||| ||| ||||| ||||||||||||| Sbjct 9130226 TGGATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 9130265 Score = 105 bits (116), Expect = 8e-18 Identities = 136/183 (74%), Gaps = 10/183 (5%) Strand=Plus/Plus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||||||| |||||| || | |||||| ||||||||||||||||||| Sbjct 9131428 AAAGAAAGTCTTCACCCTGCCGAAGGCTGCTCGGAGCTCTCGGAGCATGTGGGGCAGGCT 9131487 Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGAC---TCACTGTCATATTTGTTGTCGGCCC 138412 || || || || || ||||| |||| ||||| |||| | | | | ||| | Sbjct 9131488 GGCTGG-AAAGTGGGTGCAGTTGTCCTCAGACGGGGCACT---CTGGTGGCGGCTGGCTC 9131543 Query 138413 ACACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA--TCT 138470 ||||| | |||||| ||||||||||||||||||| | ||| ||||| || ||| Sbjct 9131544 CTACCCCAGTCAGGAGGACCAGGCAACACAGCAGCGCGGGGCTGGGCATGGTGAAGCTCT 9131603 Query 138471 GCC 138473 ||| Sbjct 9131604 GCC 9131606 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| |||||||| | | |||||||| | ||||||||||| ||||||||||||||||| Sbjct 9127894 TCAGATTTTCATCCTCATTGTCATGTACGTTTCTATGTAGTTGATGAAGATGTCAAACTC 9127953 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||| | || ||||||| Sbjct 9127954 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 9127988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 9129037 CTTACTGAATGCACTCTTCACCTGCTCCACTGCCTTGCTCTTATTCTCACAGGGCAGAAA 9129096 Query 138075 TCTGTG 138080 || ||| Sbjct 9129097 TCGGTG 9129102 >seq354 Length=1792354 Score = 102 bits (112), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 145729 TGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAG 145788 || |||||||| || |||| | ||| |||| ||| || | || |||| | ||| || | Sbjct 161513 TGTATGAAGTCACCTGGCTTCACGCCTGTGATGTGTGCAATCAGGTAGATGAGCCAGGTG 161572 Query 145789 TAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGG 145848 | | || | |||||||||||| ||| |||||||| || | | | ||||||||||| Sbjct 161573 TGGAGAGCCAAGTTGAAGGGCACAGCCAAACCCATGTCTCCTGCCCTCCGGTACAGCTGG 161632 Query 145849 CAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGT 145891 ||||| ||||| |||| | |||| ||| |||||| |||||| Sbjct 161633 CAGGACAGCTCACCGCTCACCACAGAGATCTGGCA-GGGAGGT 161674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589991319999560