Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq102 86.0 1e-11 >seq102 Length=4496374 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| || ||||| || ||||||||| | || ||||| Sbjct 620848 GCATTTTTTGGAGCACAGCTGAATTCCTTCATCCACGTGATTATGTACTCATACTATGGG 620907 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||| |||||||| ||||||||| || | || | Sbjct 620908 TTAACTGCGTTTGG-CCCATGGATTCAG-AAGTATCTTTGGTGGAAAAAATACTTGACAA 620965 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 620966 TGTTGCAGCTGGT 620978 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||||| | | || ||||| || || |||| |||||| ||||| || || Sbjct 623638 GGTTCAGTTCCACGTGACCATCGGACACACAGCGCTGTCTCTTTACACGGATTGTCCCTT 623697 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | || ||| | || || |||||||| || ||| Sbjct 623698 CCCAAAATGGATGCACTGGGCCCTCATCGCCTACGCCATCAGCTTCATATTTCTCTTTCT 623757 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 623758 TAACTTCTATGTTCGGACATACAA 623781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923063063403560