Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq102 86.0 1e-11
>seq102
Length=4496374
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/133 (76%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|||||||||||||| ||||| ||||| || ||||| || ||||||||| | || |||||
Sbjct 620848 GCATTTTTTGGAGCACAGCTGAATTCCTTCATCCACGTGATTATGTACTCATACTATGGG 620907
Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174
| | || | ||| || ||| ||||| |||||||| ||||||||| || | || |
Sbjct 620908 TTAACTGCGTTTGG-CCCATGGATTCAG-AAGTATCTTTGGTGGAAAAAATACTTGACAA 620965
Query 52175 TAATGCAGTTGGT 52187
| ||||| ||||
Sbjct 620966 TGTTGCAGCTGGT 620978
Score = 84.2 bits (92), Expect = 4e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| |||||||| | | || ||||| || || |||| |||||| ||||| || ||
Sbjct 623638 GGTTCAGTTCCACGTGACCATCGGACACACAGCGCTGTCTCTTTACACGGATTGTCCCTT 623697
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
||||||||||| || ||| | | || ||| | || || |||||||| || |||
Sbjct 623698 CCCAAAATGGATGCACTGGGCCCTCATCGCCTACGCCATCAGCTTCATATTTCTCTTTCT 623757
Query 52305 TAACTTCTATTTTAGAACATACAA 52328
|||||||||| || | ||||||||
Sbjct 623758 TAACTTCTATGTTCGGACATACAA 623781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923063063403560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |