Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq291 1644 0.0 seq136 181 7e-41 seq673 98.7 7e-16 seq898 84.2 2e-11 >seq291 Length=2225859 Score = 1644 bits (1822), Expect = 0.0 Identities = 1352/1649 (82%), Gaps = 40/1649 (2%) Strand=Plus/Plus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || |||||||| |||||||||||||||||||||| ||||| | | ||| | | Sbjct 1770575 AGGTTCCTAGGCAGGTCTTGACTGAGGATATTTGTCTAGGGAAGAAACACCTTTTTGCTA 1770634 Query 107196 TCACTCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGTAATTAAA 107241 || |||||| ||||| |||||||||| || |||||||||||| || Sbjct 1770635 TCCCTCTGGCGTTGAGCTTGATGTTCCTGTGAATACATTCAGGGTTAGTTTGTAATCGAA 1770694 Query 107242 GGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCC 107298 |||||||||||||||||||||||| ||||||||| ||| ||||||||| ||| | Sbjct 1770695 GGCATTTTGTTCTGTCCAAGGATCCCATCCTCCTCCTCCTCCCCTGTGCCCCTGCTCCAC 1770754 Query 107299 TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATC 107358 || | || ||| ||||||||||| | ||||||||||| ||| |||| ||| | | Sbjct 1770755 TGGTTTCTCATTCCATGAAGATGATTTGGTGGAAGAAGCGGCTCTGCCACCAGCATTACC 1770814 Query 107359 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGT 107418 |||||||||||||||||||||||||||||||| | ||| ||||||| |||| ||| | Sbjct 1770815 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATGGTTGCTCTGAGGTTTTCTCTCCGAC 1770874 Query 107419 TTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTA 107478 | |||||||| | |||||| |||| |||||||| || ||| ||||| |||||||| | Sbjct 1770875 TGAAATGTGACTTTGATTCCCTGGAGCTGGAGTCACAGGTCTTTCAGAGCCAGCACTGCA 1770934 Query 107479 GGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGA 107538 ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||| | Sbjct 1770935 GGGACATCCTGTACAATTCCCTGAAGCTGCCAGCGAAGAGAGCCATCAACTGTTCTGGAA 1770994 Query 107539 TCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGA 107598 ||| |||||||||| | |||| ||| |||| |||| ||||||||||| || |||| Sbjct 1770995 TCATCCGAGGGGACCTGCAAGCGGTGACAGAGGCTGTCCTGGACAACCTGGAGGTCAAGA 1771054 Query 107599 AAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCT 107658 | |||||| |||| |||| | | | | ||||| ||||| |||||||| || ||||||| Sbjct 1771055 AGAAGCGGGAGCCTTTCACAGACGCTGACTACCTGAACATGACCAGAGATTGCGAGCGCT 1771114 Query 107659 TCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCA 107718 | |||||| | ||||||||||||| |||||| ||||| ||||||||| |||||||||||| Sbjct 1771115 TTAAGGCCAAGAGGAAGTTCATACGGTTCCCTCTGAGCAAAGAAGAGTTAGACTTCCCCA 1771174 Query 107719 TTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCG 107778 |||| ||||| |||||||||||||| ||||| || ||||| ||| | |||||||| || Sbjct 1771175 TTGCATACTCTATGGTGGTCCATGATAAGATAGAGAACTTCGAAAGACTGCTGCGCGCTT 1771234 Query 107779 TGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCA 107838 ||||||||||||||||| | ||||||||||| ||||||| ||| |||||||| ||||||| Sbjct 1771235 TGTATGCCCCTCAGAACGTGTACTGTGTCCATGTGGATGAGAAATCCCCAGAAACTTTCA 1771294 Query 107839 AAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGG 107898 ||||||| |||||||| ||| | || |||||||| ||||||||||| ||||||||||||| Sbjct 1771295 AAGAGGCAGTCAAGGCGATTGTGTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGTTGG 1771354 Query 107899 TCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACT 107958 | | |||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||| Sbjct 1771355 TTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAATTGTATGGAGGACT 1771414 Query 107959 TGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCA 108018 ||||||||||||| ||||| ||||| ||| |||||||||| || ||||||||||| || | Sbjct 1771415 TGCTCCAGAGCTCGGTGCCCTGGAAATACCTACTGAATACGTGTGGGACAGACTTTCCTA 1771474 Query 108019 TAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGG 108078 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1771475 TAAAGACCAATGCTGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGG 1771534 Query 108079 AGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG 108138 |||| || ||||| |||||| |||||| |||||||| || | |||||||||||| | Sbjct 1771535 AGTCAGAAATACCTACTGAGTACAAAAAGTCTCGCTGGACCTATCACTATGAGGTGACCG 1771594 Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCA 108198 ||||| ||||| ||||||||||||||||| |||||||| || ||| |||| ||||||| Sbjct 1771595 ACACATTGTACAGAACCAGCAAGATGAAGGATCCTCCCCCAGACAATATACCTATGTTCA 1771654 Query 108199 CAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA 108258 |||||||||||||| ||||||| ||||||| ||| |||| |||||| |||| ||||| | Sbjct 1771655 CAGGGAATGCCTATATTGTGGCTTCTCGAGACTTCGTCCGCCATGTCCTAGAGAACCCCA 1771714 Query 108259 AATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGG 108318 | |||||||||||| | || ||||| ||||||||||||||||||||||| || || |||| Sbjct 1771715 AGTCCCAAAGACTGATCGAGTGGGTGAAAGACACCTATAGCCCCGACGAGCATCTGTGGG 1771774 Query 108319 CCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACA 108378 ||||||| ||||| | ||||||||||| || ||| |||| ||||||||||| ||||| Sbjct 1771775 CCACCCTGCAGCGCACACCGTGGATGCCGGGTTCTATTCCCTACCACCCCAAGTTTCACA 1771834 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438 |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||| |||| Sbjct 1771835 TCTCCGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAAAACCATGAGGGAGACGTCA 1771894 Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498 | | ||| || ||||| ||||| |||||||||| ||| ||| || | |||| |||| | Sbjct 1771895 GTAGGGGTGCACCTTACGCACCTTGCTCTGGAACCCACCGGCGGTCGGTCTGTGTTTATG 1771954 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558 || | ||||||||| |||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 1771955 GGACTGGGGACCTGCACTGGATTCTTCAAAACCATCACCTATTGGCTAACAAGTTTGACC 1772014 Query 108559 CGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCT 108618 ||| ||||||||| || ||||| |||||||||||||||||| ||||| | |||||||||| Sbjct 1772015 CGAAGGTGGATGACAATGTCCTTCAGTGCTTAGAAGAGTACTTACGTTACAAGGCCATCT 1772074 Query 108619 ATGGGACTGAACTTTGAGCT------------------GCACTGTGGGCCAGGGAC-TGT 108659 ||||||||||||| |||| | | ||||| | |||| || ||| Sbjct 1772075 ATGGGACTGAACTCTGAGATACCCTATCAGAGAAGTGCTCCCTGTGAGGCAGGAACATGT 1772134 Query 108660 GCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCC 108719 || ||||||||| ||| || |||| || | |||||||| ||| ||||| |||||||| Sbjct 1772135 GCAAACATGCCCGGGGGGTGCTGGGAC--AGCGGGGTGGGAGACCGGGGCTCTGGAATCC 1772192 Query 108720 ATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||| | ||||| ||| |||| Sbjct 1772193 TTGGCATCCCCAA--GTCAGGGGGTTGCT 1772219 >seq136 Length=3786782 Score = 181 bits (200), Expect = 7e-41 Identities = 585/891 (66%), Gaps = 33/891 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||| ||| ||| || ||||| |||||||| |||||||||||| | || Sbjct 1751543 CCCCTCAGCAAAGAGGAGGCAGAGTTTCCCATCGCCTACTCTATGGTGGTCCATCACAAA 1751484 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||||| |||||||| | ||||| | Sbjct 1751483 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATGCGCCTCAGAATTTCTACTGCATT 1751424 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| ||||| || | || | ||||| | | ||| |||||| Sbjct 1751423 CACGTGGACAGAAAGTCGGAGGACTCCTTTTTGGCCGCGGTGATTGGCATCGCATCCTGC 1751364 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| || ||| ||||| || || || ||| | Sbjct 1751363 TTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAGTGTGGTGTACGCTTCGTGGAGTCGG 1751304 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA--GTGCCATGGAAGT 107985 ||||| || ||||| ||||| ||| ||||| | || ||| | | | | | ||||||| Sbjct 1751303 GTGCAGGCCGACCTCAACTGCATGCAAGACCT-CTACAG-GATGAAGGCGGACTGGAAGT 1751246 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || || || |||||||| || || |||| | Sbjct 1751245 ACTTGATCAATCTTTGCGGTATGGATTTTCCTATTAAGACCAACTTGGAAATTGTCCGGA 1751186 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAGTCCa 108102 |||||| | | | ||| | |||| | || | || | | || || | || Sbjct 1751185 AGCTCAAGTCGCTCATGGGGGACAACAACCTCGAAACCGAGAGGATGCCATCCAA---CA 1751129 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGG----TGACAGACACACTGTACCCTACCAGC 108158 ||||| | | |||||| | | ||| ||| | || || | ||| || ||| Sbjct 1751128 AAAAAGAAAGGTGGAAAAAGCATTATAAGGTTGTTAACGGA-AAGCTG-ACGAACACAGG 1751071 Query 108159 AA--GATGAA--GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 | || || | | ||||| | ||| | |||| ||||| |||| | ||||||||| Sbjct 1751070 GACTGACAAAGCGCAGCCTCCTCTTGAAA---CACCCCTGTTCTCAGGCAGTGCCTATTT 1751014 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274 |||| | | | | || | || |||| || ||| ||||| | | Sbjct 1751013 CGTGGTCAGTAGGAAGTACGTGGGGTACGTGCTAGAGAATGAAAAAATCCAAAAGTTCAT 1750954 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 || |||| || |||||||| ||||| || || | ||||||||||| ||||| | | Sbjct 1750953 GGAGTGGGCAAAGGACACCTACAGCCCGGATGAGTATCTCTGGGCCACTATTCAGAG-GA 1750895 Query 108335 TCCGTGGATG--CCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| |||| || ||||| | |||| ||||| ||||| |||| || |||||| Sbjct 1750894 TCC-CAGATGTCCCGGGCTCCCTGTCCTTAAGCCA---GAAGTACGACATGTCTGACATG 1750839 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 || ||||| ||| | ||||||||||||||| |||||| || || || ||| || Sbjct 1750838 CACGCGATCGCGAGGTTTGTCAAGTGGCAGTACTTCGAGGGTGACGTTTCCAAGGGCGCC 1750779 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||||||| ||| |||| | | || | ||| | | ||| ||||| ||| Sbjct 1750778 CCCTACCCACCCTGCAGTGGGGTCCACGTGCGTTCCGTGTGCGTGTTCGGAGCCGGTGAC 1750719 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||||| || | | || ||| | || || |||||||| ||| || Sbjct 1750718 TTGAACTGGATGCTTCGCAGGCACCACTTGTTTGCCAACAAGTTCGACACG 1750668 >seq673 Length=1140970 Score = 98.7 bits (108), Expect = 7e-16 Identities = 234/341 (69%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 107696 TAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 ||||||||| ||| || ||||| | || ||| ||||| ||||| | || | || | Sbjct 22256 TAAAGAAGAAGCTGGA-TTCCCTTTGGCGTACATCATGGTCATCCATCACAATTTCGATA 22314 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGT 107812 ||| | | |||| | ||||| | || |||||| |||| | ||||| || ||||| Sbjct 22315 CCTTCGCAAGGCTCTTTAGAGCCATTTACATGCCCC--AGAATGTCTACTGCGTTCACGT 22372 Query 107813 GGATGTGAAGTCC-CCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTC 107870 ||||| ||| | ||| || ||| |||||| | || || | ||| | ||||||| Sbjct 22373 GGATGAAAAGGCGACCACTGAATTT-AAAGAGTCAGTGGAG-CAGTTACTGGGCTGCTTC 22430 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 || |||| |||| |||| ||| ||| ||||| || |||| | ||||| | Sbjct 22431 CCGAATGCCTTCCTGGCTTCCAAGATGGAACCGGTCGTCTATGGGGGCATCTCCAGGCTC 22490 Query 107931 CAAGCTGACCTGAACTGTATGGAAGACTTGCTC-CAGAGCTCA--GTGCCATGGAAGTAC 107987 || |||||||||||||| | ||||| ||| ||| | || ||||| ||||||||| Sbjct 22491 CAGGCTGACCTGAACTGCCTCAAAGAC---CTCGCAGGGTCCAAGGTGCCCTGGAAGTAC 22547 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||| |||||||||| | || ||||| Sbjct 22548 GCCATCAACACGTGTGGGCAAGACTTCCCCCTGAAAACCAA 22588 Score = 87.8 bits (96), Expect = 1e-12 Identities = 209/306 (68%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT--ATGCCC 107787 ||||| ||||| || | |||| | || ||| |||| | | ||| | | |||||| Sbjct 46282 ATGGTCATCCATAAGGACTTTGACACTTTCGAAAGGCTCTTCAGGGCCATCTTTATGCCC 46341 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCG 107846 | |||| | ||||| || |||||||||| ||| || | | || ||| |||||| | Sbjct 46342 C--AGAATGTCTACTGCGTTCACGTGGATGAAAAGGCCACCGTTGAATTT-AAAGAGTCA 46398 Query 107847 GTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 || || | ||| | ||||||||| |||| |||| |||| ||| ||| ||||| Sbjct 46399 GTGGAG-CGGTTACTGGGCTGCTTCCCGAATGCCTTCCTGGCTTCCAAGATGGAACCGGT 46457 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC-C 107964 || |||| | ||||| | || |||||||||||||| | ||||| ||| | Sbjct 46458 CGTCTATGGGGGCATCTCCAGGCTCCAGGCTGACCTGAACTGCCTCAAAGAC---CTCGC 46514 Query 107965 AGAGCTCA--GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 || | || ||||| ||||||||| | || || || ||| |||||||||| | || Sbjct 46515 AGGGTCCAAGGTGCCCTGGAAGTACGCCATCAACACGTGTGGGCAAGACTTCCCCCTGAA 46574 Query 108023 GACCAA 108028 ||||| Sbjct 46575 AACCAA 46580 >seq898 Length=543307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/251 (69%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| || | | |||||||| |||||||||| |||| | |||| || || |||| Sbjct 2275 ATGCCCCACA--ATGTCTACTGTGTTCACGTGGATGAGAAGGCAACAGATACATTTAAAG 2218 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | | || ||| | ||| | ||||||||| |||| ||| |||| ||| ||| Sbjct 2217 ATTCCGTGAAG-CAGTTACTGAGCTGCTTCCCAAATGCTTTCCTGGCTTCCAAGATGGAA 2159 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 || || || || | | ||||| | || |||||||||||||| | ||||| Sbjct 2158 CCAGTTGTCTACGGGGGCATCTCCAGGCTCCAGGCTGACCTGAACTGCCTCAAAGAC--- 2102 Query 107961 CTC-CAGAGCTCA--GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 ||| ||| | || ||||| ||||||||| | || || || ||| |||||||||| Sbjct 2101 CTCGCAGGGTCCAAGGTGCCCTGGAAGTACGCCATTAACACGTGTGGGCAAGACTTCCCC 2042 Query 108018 ATAAAGACCAA 108028 | || ||||| Sbjct 2041 CTGAAAACCAA 2031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348219610188186