Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq354 84.2 2e-11 seq185 82.4 6e-11 >seq354 Length=1792354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 238/362 (66%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 20005 GTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAA 20064 || ||||| ||||| | || | | ||||| |||||||||| | | || | | Sbjct 162080 GTGTTTGGCATGCAGGTGCACTACAGCCTGAGAGATGAATTTCCTCTGCTGACAATAATG 162021 Query 20065 CGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAAT 20124 || ||||||| || | ||| | || || | | |||||||| || || || |||||| Sbjct 162020 CGTATATTTTGAAAGAGTGTTTTGGAGGATATTCTGTGGTTTATCAAGGGCTCTACAAAT 161961 Query 20125 TCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATC-TAAGCAATT 20183 ||| || | || ||||| || || ||| | ||| || | || | || Sbjct 161960 GCTAAGGAACAGTCTTCCAAGGGAGTGAAAATCTGGGAAGTCAATGCCTCCTGAG-ACTT 161902 Query 20184 TTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATT 20243 || ||| | ||||| ||| | ||| | |||||||| ||||| | ||||| | Sbjct 161901 CTTGGACAACCTGGGATTCTCCAATAGACAAAAAGGGGATTTAGGTCCAATTTATGGCTC 161842 Query 20244 TCAATGGAGA--CATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAA 20301 ||| |||||| |||||||| | ||||| || ||| || |||||| || ||| Sbjct 161841 TCAGTGGAGAGGCATTTTGGGGTAGAATACAAAGATGAGAATTCAGATTATTCAGGTCAA 161782 Query 20302 GGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGA 20361 |||||||| ||| | ||||| || || | |||| |||| || | || ||||||||| Sbjct 161781 GGAGTAGACCAACTGCAAAAGGTGTTTCACACAATTGAAACCAAACTCAAGGACAGAAGA 161722 Query 20362 AT 20363 || Sbjct 161721 AT 161720 >seq185 Length=3693041 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | ||||| || ||| || ||||| || ||||| | || Sbjct 3389618 AGATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAA 3389677 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | ||| |||| || || |||| || | || | || ||||| ||||| || || || Sbjct 3389678 TGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTT 3389737 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| || || || || || ||||| || || ||||||||||| | |||| Sbjct 3389738 CAACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCACACATCACAG 3389787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399127618877605