Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq354 84.2 2e-11
seq185 82.4 6e-11
>seq354
Length=1792354
Score = 84.2 bits (92), Expect = 2e-11
Identities = 238/362 (66%), Gaps = 4/362 (1%)
Strand=Plus/Minus
Query 20005 GTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAA 20064
|| ||||| ||||| | || | | ||||| |||||||||| | | || | |
Sbjct 162080 GTGTTTGGCATGCAGGTGCACTACAGCCTGAGAGATGAATTTCCTCTGCTGACAATAATG 162021
Query 20065 CGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAAT 20124
|| ||||||| || | ||| | || || | | |||||||| || || || ||||||
Sbjct 162020 CGTATATTTTGAAAGAGTGTTTTGGAGGATATTCTGTGGTTTATCAAGGGCTCTACAAAT 161961
Query 20125 TCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATC-TAAGCAATT 20183
||| || | || ||||| || || ||| | ||| || | || | ||
Sbjct 161960 GCTAAGGAACAGTCTTCCAAGGGAGTGAAAATCTGGGAAGTCAATGCCTCCTGAG-ACTT 161902
Query 20184 TTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATT 20243
|| ||| | ||||| ||| | ||| | |||||||| ||||| | ||||| |
Sbjct 161901 CTTGGACAACCTGGGATTCTCCAATAGACAAAAAGGGGATTTAGGTCCAATTTATGGCTC 161842
Query 20244 TCAATGGAGA--CATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAA 20301
||| |||||| |||||||| | ||||| || ||| || |||||| || |||
Sbjct 161841 TCAGTGGAGAGGCATTTTGGGGTAGAATACAAAGATGAGAATTCAGATTATTCAGGTCAA 161782
Query 20302 GGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGA 20361
|||||||| ||| | ||||| || || | |||| |||| || | || |||||||||
Sbjct 161781 GGAGTAGACCAACTGCAAAAGGTGTTTCACACAATTGAAACCAAACTCAAGGACAGAAGA 161722
Query 20362 AT 20363
||
Sbjct 161721 AT 161720
>seq185
Length=3693041
Score = 82.4 bits (90), Expect = 6e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447
|||| | ||| | ||||| | ||||| || ||| || ||||| || ||||| | ||
Sbjct 3389618 AGATCTTCCTCTGATGGCCCTTCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAA 3389677
Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507
| ||| |||| || || |||| || | || | || ||||| ||||| || || ||
Sbjct 3389678 TGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGCGTGCCCTT 3389737
Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557
||| || || || || || ||||| || || ||||||||||| | ||||
Sbjct 3389738 CAACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCACACATCACAG 3389787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399127618877605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |