Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq56 127 2e-24 seq292 120 2e-22 seq101 93.3 3e-14 seq376 89.7 4e-13 >seq56 Length=5723395 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 4239402 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239461 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | ||||| |||||| Sbjct 4239462 AGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4239521 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 4239522 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4239581 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 4239582 CCGGTCAAGGTCTTCACGAAGATCTGCATG 4239611 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 4239630 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239689 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | ||||| |||||| Sbjct 4239690 AGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4239749 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 4239750 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 4239809 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| ||||| ||||| Sbjct 4239810 CCGGTCAAGGTCTTCACGAAGATCTGCAT 4239838 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| || |||||||| ||| ||| | || ||| Sbjct 4239174 ACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239233 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | ||||| |||||| Sbjct 4239234 AGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4239293 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || |||||| Sbjct 4239294 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4239353 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 4239354 CCGGTCAAGGTCTTCACGAAGATCTGCATG 4239383 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | || | |||||| ||| ||||||||| ||||||||||| | Sbjct 4238928 CCGCCCCTCAAGCGCAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4238987 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| || || || |||| || ||| ||||| || || Sbjct 4238988 AGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239047 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || || || || || || | | | | |||| | ||||||| Sbjct 4239048 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239107 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || |||||||| |||| |||||||| ||||| |||||| Sbjct 4239108 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4239155 >seq292 Length=3256830 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| ||| ||||| || ||||| || ||| ||| | || ||| Sbjct 1957759 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTCC 1957818 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| ||||| |||||||| || | |||||||| || Sbjct 1957819 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGG 1957878 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 1957879 ATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 1957938 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||||||||| ||||| Sbjct 1957939 CCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq101 Length=4626942 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||| ||||| ||| ||| || || |||||||| || Sbjct 1982751 GCCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGA 1982810 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || ||||| || || | || ||| ||||| || || Sbjct 1982811 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1982870 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||| ||| || || ||| || | | | |||| | ||||| Sbjct 1982871 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCAC 1982930 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1982931 TTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979 >seq376 Length=1707047 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGT---TGGCGATCGTCG 45184 ||||||||||| ||| ||| |||||||| ||||| || ||| |||| || || Sbjct 762732 ACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAACAGAGTGTGGCCAT-GT-- 762676 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC- 45243 || || ||||| | ||| || ||| ||||||||||| ||| | ||||| ||||| Sbjct 762675 TCTAGCTGTTTGCTGGCAAAGGTCAGACGCTGTTGGTCAGGAAAGATGCCCTCGTTGTCT 762616 Query 45244 CGCAATTTTTTGCTTAACCGC-CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 || | |||| |||| || | | | | |||| | || |||| | ||| || | Sbjct 762615 CGGA--TTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTTGGCCTCGAGGGTGATGG 762558 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||| |||||||||||||| ||||| Sbjct 762557 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 762524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395019399208369