Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq56 127 2e-24
seq292 120 2e-22
seq101 93.3 3e-14
seq376 89.7 4e-13
>seq56
Length=5723395
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||||||| ||||||||| ||||||||||| ||| ||| | || |||
Sbjct 4239402 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239461
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || |||| || ||| ||||| || || | ||||| ||||||
Sbjct 4239462 AGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4239521
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||||||||||| ||| || ||||||
Sbjct 4239522 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4239581
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| |||||||| ||||| ||||||
Sbjct 4239582 CCGGTCAAGGTCTTCACGAAGATCTGCATG 4239611
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||||||| ||||||||| ||||||||||| ||| ||| | || |||
Sbjct 4239630 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239689
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || |||| || ||| ||||| || || | ||||| ||||||
Sbjct 4239690 AGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4239749
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||||||||||| ||| || |||||
Sbjct 4239750 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 4239809
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||| ||||| |||||
Sbjct 4239810 CCGGTCAAGGTCTTCACGAAGATCTGCAT 4239838
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||||||||| || |||||||| ||| ||| | || |||
Sbjct 4239174 ACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239233
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || |||| || ||| ||||| || || | ||||| ||||||
Sbjct 4239234 AGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4239293
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||||||||||| ||| || ||||||
Sbjct 4239294 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4239353
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| |||||||| ||||| ||||||
Sbjct 4239354 CCGGTCAAGGTCTTCACGAAGATCTGCATG 4239383
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || ||||| | | || | |||||| ||| ||||||||| ||||||||||| |
Sbjct 4238928 CCGCCCCTCAAGCGCAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4238987
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| ||||| || || || |||| || ||| ||||| || ||
Sbjct 4238988 AGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239047
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| || || || || || || | | | | |||| | |||||||
Sbjct 4239048 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239107
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||| ||| || |||||||| |||| |||||||| ||||| ||||||
Sbjct 4239108 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 4239155
>seq292
Length=3256830
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| ||| ||| ||||| || ||||| || ||| ||| | || |||
Sbjct 1957759 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTCC 1957818
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || |||| ||||| |||||||| || | |||||||| ||
Sbjct 1957819 AGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGG 1957878
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||||| | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 1957879 ATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 1957938
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||||||||| |||||
Sbjct 1957939 CCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
>seq101
Length=4626942
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||||||||||| | | |||| ||||| ||| ||| || || |||||||| ||
Sbjct 1982751 GCCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGA 1982810
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| || || ||||| || || | || ||| ||||| || ||
Sbjct 1982811 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1982870
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||| ||| || || ||| || | | | |||| | |||||
Sbjct 1982871 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCAC 1982930
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||| ||| || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 1982931 TTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979
>seq376
Length=1707047
Score = 89.7 bits (98), Expect = 4e-13
Identities = 152/214 (71%), Gaps = 10/214 (5%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGT---TGGCGATCGTCG 45184
||||||||||| ||| ||| |||||||| ||||| || ||| |||| || ||
Sbjct 762732 ACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAACAGAGTGTGGCCAT-GT-- 762676
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC- 45243
|| || ||||| | ||| || ||| ||||||||||| ||| | ||||| |||||
Sbjct 762675 TCTAGCTGTTTGCTGGCAAAGGTCAGACGCTGTTGGTCAGGAAAGATGCCCTCGTTGTCT 762616
Query 45244 CGCAATTTTTTGCTTAACCGC-CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302
|| | |||| |||| || | | | | |||| | || |||| | ||| || |
Sbjct 762615 CGGA--TTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTTGGCCTCGAGGGTGATGG 762558
Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||| |||||||||||||| |||||
Sbjct 762557 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 762524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395019399208369
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |