Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq292 98.7 8e-16 seq56 86.0 5e-12 seq694 84.2 2e-11 seq26 82.4 6e-11 >seq292 Length=3256830 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| ||| || || || ||||| || || ||||| || | | Sbjct 1957741 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 1957800 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| |||||||||||| | || || | || || || ||| Sbjct 1957801 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGG 1957860 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| |||||||| |||| | || || || | ||| ||||||| ||||||| Sbjct 1957861 ATGCCCTCCTTATCTTGGATTT-TGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGAC 1957919 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 1957920 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq56 Length=5723395 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 4239399 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239458 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| |||||| |||| || || || || || ||| | ||| || || || Sbjct 4239459 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239518 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 4239519 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239578 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || || || || || ||||| Sbjct 4239579 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 4239627 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239686 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| |||||| |||| || || || || || ||| | ||| || || || Sbjct 4239687 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239746 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 4239747 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239806 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||||||| || || || || || |||||| Sbjct 4239807 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839 >seq694 Length=814564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 212130 AAGACTTCTTCCTTTTCTTAGCACCACCACGGAGTCTCAACACAAGATGAAGAGTGGACT 212189 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 ||||||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 212190 ACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 212249 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | ||||| || ||||| || | ||||||||||| ||| | ||| || | | Sbjct 212250 TTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTT 212309 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | || || ||| || |||| |||||| | || || || | ||||| || | Sbjct 212310 CTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 212369 Query 18316 AAATTTGCAT 18325 |||| ||||| Sbjct 212370 AAATCTGCAT 212379 >seq26 Length=7528108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/160 (72%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 6810838 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACT 6810779 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA---ATCTTCCAATTGTTTGCCCGCAT 18192 | ||||||||||||||||| | || || |||| |||||||| ||| ||||| ||| Sbjct 6810778 CCTTTTGAATGTTGTAGTCAGACAAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAA 6810719 Query 18193 AGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||| || || || ||||| || | ||||||||||| Sbjct 6810718 AGATCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTTATC 6810679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379290421097805