Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq292 98.7 8e-16
seq56 86.0 5e-12
seq694 84.2 2e-11
seq26 82.4 6e-11
>seq292
Length=3256830
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | ||| |||| ||| || || || ||||| || || ||||| || | |
Sbjct 1957741 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 1957800
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||||||| | || || | || || || |||
Sbjct 1957801 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGG 1957860
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| |||||||| |||| | || || || | ||| ||||||| |||||||
Sbjct 1957861 ATGCCCTCCTTATCTTGGATTT-TGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGAC 1957919
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | ||||| |||| || || ||||| || |||||
Sbjct 1957920 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
>seq56
Length=5723395
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 4239399 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239458
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| |||||| |||| || || || || || ||| | ||| || || ||
Sbjct 4239459 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239518
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | | | ||||||| |||||| || | ||||||| |
Sbjct 4239519 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239578
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||||||||| || || || || || |||||
Sbjct 4239579 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 4239627 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239686
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| |||||| |||| || || || || || ||| | ||| || || ||
Sbjct 4239687 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239746
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | | | ||||||| |||||| || | ||||||| |
Sbjct 4239747 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239806
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| |||||||| || || || || || ||||||
Sbjct 4239807 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839
>seq694
Length=814564
Score = 84.2 bits (92), Expect = 2e-11
Identities = 169/250 (68%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 212130 AAGACTTCTTCCTTTTCTTAGCACCACCACGGAGTCTCAACACAAGATGAAGAGTGGACT 212189
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
||||||||||||||||| | || || | |||||||| ||| ||||| ||| |||
Sbjct 212190 ACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 212249
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| ||||| || ||||| || | ||||||||||| ||| | ||| || | |
Sbjct 212250 TTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTT 212309
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| | || || ||| || |||| |||||| | || || || | ||||| || |
Sbjct 212310 CTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 212369
Query 18316 AAATTTGCAT 18325
|||| |||||
Sbjct 212370 AAATCTGCAT 212379
>seq26
Length=7528108
Score = 82.4 bits (90), Expect = 6e-11
Identities = 115/160 (72%), Gaps = 5/160 (3%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 6810838 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACT 6810779
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA---ATCTTCCAATTGTTTGCCCGCAT 18192
| ||||||||||||||||| | || || |||| |||||||| ||| ||||| |||
Sbjct 6810778 CCTTTTGAATGTTGTAGTCAGACAAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAA 6810719
Query 18193 AGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|||| || || || ||||| || | |||||||||||
Sbjct 6810718 AGATCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTTATC 6810679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379290421097805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |