Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq86 120 3e-22 seq292 98.7 9e-16 seq1820 96.9 3e-15 seq694 95.1 1e-14 seq54 93.3 4e-14 seq517 91.5 1e-13 seq695 89.7 5e-13 seq26 86.0 6e-12 seq56 84.2 2e-11 >seq86 Length=5199016 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 130198 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 130257 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 130258 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 130317 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 130318 CCTGTCTCTGTCTGAGACTCAATGATGGC 130346 >seq292 Length=3256830 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 1957967 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1957908 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| || ||||| ||| | || ||||||||| Sbjct 1957907 GACACCATTGAGAACGTTAAAGCCAAAATCCAAGATAAGGAGGGCATCCCCCCCGACCAG 1957848 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||||||| ||||||| ||| || ||||| || Sbjct 1957847 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACAAT 1957788 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || |||| ||| | || |||| || Sbjct 1957787 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTCCGGGGTGG 1957741 >seq1820 Length=90317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| |||||||| ||||| ||||| ||||| || |||||| | || || ||| Sbjct 66750 TCAAA-ATGCAGATTTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAA 66808 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| ||||||| || || | || || || || || | | ||| Sbjct 66809 CCCAGTGACACAATCGAAACTGTGAAGGCCAAGATCCAAGATAAAGAGTGCATCCGCCCC 66868 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | ||| Sbjct 66869 GACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 66928 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||| | || ||||| |||||||| || |||||||| Sbjct 66929 TACAACCTCCAGAAAGAGTCGACTCTCCACCTGGTACT 66966 >seq694 Length=814564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || || || ||||| | || |||||||| || Sbjct 212379 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTTGAGGTTGAACCCTCG 212320 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 212319 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 212260 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | ||||| || |||||||| || ||||||| | | | ||| || || || || Sbjct 212259 CAGAGACTAATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTACAA 212201 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| | || ||||||||||| || | ||||| Sbjct 212200 CATTCAAAAGTAGTCCACTCTTCATCTTGTGTTGAGACT 212162 >seq54 Length=5886867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| ||||| ||||| || |||||||| || |||||| ||||||| ||| | Sbjct 1575063 GCCTTCGCTGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCAATATTCTGGCTC 1575004 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||||||| ||||||||||| ||||| |||||| ||| || Sbjct 1575003 AAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 1574963 >seq517 Length=1171097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || || || ||||| |||| |||||||| || Sbjct 1142414 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 1142473 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 1142474 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 1142533 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || || |||||||| || ||||||| | | | ||| || | || || Sbjct 1142534 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTAACTACAA 1142592 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | ||||||| || || ||||||||||| || | ||||| Sbjct 1142593 CTTTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 1142631 >seq695 Length=815165 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTA-AAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||| |||||||| || || || || || || || ||||| |||| |||||||| || Sbjct 16683 ATGCAGATTTTCGTTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 16742 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| || || | || ||| |||||||| | || || || || Sbjct 16743 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 16802 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || |||||||| | ||||||| | | | ||| || || || | Sbjct 16803 GCAGAGACTGATCTTTGCTGGCAAGCCACTGGAAGA-TGGACGTACTTTGTCTGACTACA 16861 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||||||||| || | ||||| Sbjct 16862 ACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 16901 >seq26 Length=7528108 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||| | || || || || || || || ||||| || | |||||||| || Sbjct 6810586 ATGCAGATATTCATGAAAACCCTAACGGGGAAGACCATCACTCTCAAGGTTGAACCCTCG 6810645 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | || ||||| ||| Sbjct 6810646 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAG 6810705 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC---TCTATGACTATGAGCGATTAT 31369 ||| | || || || |||||||| || ||||||| | || ||| || || || Sbjct 6810706 CAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTACTTTGTCTGACTAC 6810765 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || |||||||| || || | ||||| Sbjct 6810766 AACATTCAAAAGGAGTCCACTCTTCAGCTTGTGTTGAGACT 6810806 >seq56 Length=5723395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || |||||| | || || || || Sbjct 4239155 CATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4239096 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| || || || || || ||| | || || ||||| Sbjct 4239095 TGACACCATCGAGAACGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCA 4239036 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || |||||| ||||||| || || || || || Sbjct 4239035 GCAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4238976 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || ||||| || || || || | ||||||||||| Sbjct 4238975 CATCCAGAAGGAGTCCACTCTGCACCTCGTCCTGCGCTTGAGGGGCGGT 4238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445701825164880