Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq4644 172 2e-38 >seq4644 Length=1882 Score = 172 bits (190), Expect = 2e-38 Identities = 314/453 (69%), Gaps = 9/453 (2%) Strand=Plus/Minus Query 33403 CCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACC 33462 |||| |||| || ||||| |||| ||||| || | || ||||| | |||||| ||| Sbjct 1728 CCTCGTCTTCGGCTGGCGGTATATTGCCGATGGGCTTCAAAAGCCGCCG-TGGTTGAACC 1670 Query 33463 AGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCC 33522 || | | |||||||| || || | ||||| | ||| | |||| || | |||| Sbjct 1669 AGTCTATCCATTCCAAGGTAGCGAACTCGACCGCTTCGAAGCTCCTCCATGGTCCACGCC 1610 Query 33523 GATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGC 33582 ||||||| | || | |||||| || |||||||||| ||| || || || |||||||||| Sbjct 1609 GATGAATGACCTCGGCCTTGTAAAGACCGTTGATCGCTTCTGCGAGGGCGTTGTCGTAGC 1550 Query 33583 TGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGC 33642 ||||||| ||| |||| || |||||||| || || || |||| ||| ||| |||| Sbjct 1549 TGTCGCCGACGCTTCCGATAGATGGCTCGATACCTGCTTCTGCCAACCGCTCGGAATAGC 1490 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 ||| | ||||||||| || | || || ||||| | | | | ||| | | | | Sbjct 1489 GAAAGGACACGTATTGAACACCGCGATCCGAGTGATGCA-CTAGG--CCGCCATGAGCGG 1433 Query 33703 GTTGGCGGGCGTACAG---CGCTTGTTCAAGTGCATCCAGAACAAAGTCCG-TGGTCATC 33758 | | || | | | | | | || || ||||| || |||||| | | || | Sbjct 1432 GACGCCGATCATGATGAGCCTCCTCGTCGAGGGCATCGAGGACAAAGCCTGCATGTGCT- 1374 Query 33759 GACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACG 33818 | | ||| ||||||| || ||||| || |||||||| |||||||||||||| |||||| Sbjct 1373 GTCCGGCTCGCCCGCCATCCGACAATGCGACGGGCGAAGACGTCGATCACGAAGGCCACG 1314 Query 33819 TACAGCCAGCCTTGCCATGTCGAGACATACGTA 33851 || | |||| | ||| || | |||||| ||| Sbjct 1313 TAGACGAAGCCCTCCCAAGTGGCGACATAAGTA 1281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170648512226030