Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_003309.1
Length=53373
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 172 2e-38
>seq4644
Length=1882
Score = 172 bits (190), Expect = 2e-38
Identities = 314/453 (69%), Gaps = 9/453 (2%)
Strand=Plus/Minus
Query 33403 CCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACC 33462
|||| |||| || ||||| |||| ||||| || | || ||||| | |||||| |||
Sbjct 1728 CCTCGTCTTCGGCTGGCGGTATATTGCCGATGGGCTTCAAAAGCCGCCG-TGGTTGAACC 1670
Query 33463 AGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCC 33522
|| | | |||||||| || || | ||||| | ||| | |||| || | ||||
Sbjct 1669 AGTCTATCCATTCCAAGGTAGCGAACTCGACCGCTTCGAAGCTCCTCCATGGTCCACGCC 1610
Query 33523 GATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGC 33582
||||||| | || | |||||| || |||||||||| ||| || || || ||||||||||
Sbjct 1609 GATGAATGACCTCGGCCTTGTAAAGACCGTTGATCGCTTCTGCGAGGGCGTTGTCGTAGC 1550
Query 33583 TGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGC 33642
||||||| ||| |||| || |||||||| || || || |||| ||| ||| ||||
Sbjct 1549 TGTCGCCGACGCTTCCGATAGATGGCTCGATACCTGCTTCTGCCAACCGCTCGGAATAGC 1490
Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702
||| | ||||||||| || | || || ||||| | | | | ||| | | | |
Sbjct 1489 GAAAGGACACGTATTGAACACCGCGATCCGAGTGATGCA-CTAGG--CCGCCATGAGCGG 1433
Query 33703 GTTGGCGGGCGTACAG---CGCTTGTTCAAGTGCATCCAGAACAAAGTCCG-TGGTCATC 33758
| | || | | | | | | || || ||||| || |||||| | | || |
Sbjct 1432 GACGCCGATCATGATGAGCCTCCTCGTCGAGGGCATCGAGGACAAAGCCTGCATGTGCT- 1374
Query 33759 GACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACG 33818
| | ||| ||||||| || ||||| || |||||||| |||||||||||||| ||||||
Sbjct 1373 GTCCGGCTCGCCCGCCATCCGACAATGCGACGGGCGAAGACGTCGATCACGAAGGCCACG 1314
Query 33819 TACAGCCAGCCTTGCCATGTCGAGACATACGTA 33851
|| | |||| | ||| || | |||||| |||
Sbjct 1313 TAGACGAAGCCCTCCCAAGTGGCGACATAAGTA 1281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 170648512226030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |