Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq923 374 1e-98
seq61 192 7e-44
seq86 125 9e-24
seq54 114 2e-20
seq2 107 2e-18
seq64 98.7 1e-15
>seq923
Length=521203
Score = 374 bits (414), Expect = 1e-98
Identities = 374/481 (78%), Gaps = 7/481 (1%)
Strand=Plus/Minus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||||||||||||||| |||||||||| ||||| ||||| || ||||| ||||||
Sbjct 162355 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 162296
Query 188232 ATACGAATGGCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACA 188290
|| |||||||| |||||||||||||||||| | || ||| ||| ||| ||| |||||
Sbjct 162295 ATCCGAATGGCCTTTCTAAGAAAAGTCTACAGCATTCTTTCTCTGCAAGTTCTCTTAACT 162236
Query 188291 ACGGCAACAGCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAGT 188350
|| | || ||| | | |||||||||||||| | || |||||||| |||| | ||
Sbjct 162235 ACAGTGACGGCTTCTTT-TTTTTATACTTTGAGTCTATATGGACATTTGTACATGAAAGC 162177
Query 188351 CCTGTTCTAATATTGGCATCAATGTTCGGATCTATAGGCTTGATTTTCGCATTGACTTTA 188410
|||| |||| |||| | | |||| | | || |||||||| ||||||||| ||
Sbjct 162176 CCTGCCTTAATTTTGGTGTTTGCCCTTGGATATTTGGGTTTGATTTTAGCATTGACTGTA 162117
Query 188411 CACAGACATAAACATCCCCTGAATCTGTACCTACTTTGTGGATTTACACTGTTAGAATCT 188470
|||||||||| |||||||| || |||||||| |||| |||||||||||| || ||| ||
Sbjct 162116 AACAGACATAAGCATCCCCTTAACCTGTACCTCCTTTTTGGATTTACACTATTTGAAGCT 162057
Query 188471 CTAACGCTGGCCTCTGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATG 188530
|| || |||||| ||||||||||||||||||| |||| | | ||||| || ||
Sbjct 162056 CTGACTGTGGCCTTTGTTGTTACTTTCTATGAT----GTAT-ATATTGCAAGCGTTTATA 162002
Query 188531 TTGACTACTGCAGTGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTC 188590
|||||||||| | ||||||| | || || || ||| |||||||| ||||||||||||
Sbjct 162001 CTGACTACTGCTTTATTTCTTGGTTTGTCTGTATATACACTACAATCTAAGAGAGATTTC 161942
Query 188591 AGTAAACTTGTAACAGGATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAGTCTTG 188650
|| ||| ||| | ||||| ||||||| | ||| |||||||| ||||||||| ||||
Sbjct 161941 AGCAAATTTGGAGCAGGACTGTTTGCGGTTTTGTGGATTTTGTGCTTGTCAGGAACCTTG 161882
Query 188651 A 188651
|
Sbjct 161881 A 161881
>seq61
Length=5536230
Score = 192 bits (212), Expect = 7e-44
Identities = 407/603 (67%), Gaps = 11/603 (2%)
Strand=Plus/Minus
Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625
|||||| ||||||| ||| || || || ||| | | |||||| |||| |||| |||
Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334
Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685
| |||| |||||| || ||||| |||| | | | ||||| ||||| | | |
Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274
Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745
|| || | |||| ||||||||| | ||||||||||| | || | || ||||| |
Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214
Query 33746 GGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33802
|| |||| ||||| |||||||| |||| ||| ||| | ||||||||
Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154
Query 33803 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862
||| | |||| | ||||| | | || | || |||||||| | |||| |||||
Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094
Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922
| ||||||||||||||| ||||| ||||||| ||||| | || || || | |||||
Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034
Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982
| ||| || ||||||| |||| | | | |||| | | |||||||| |||||
Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977
Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTCTGG 34039
||||| | ||| ||||| || |||| || || | |||||||| |||| || ||
Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917
Query 34040 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099
| || | ||| | | || || || || | | |||| || || |||||| |||
Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859
Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159
|| ||||| || || ||| |||| | ||| | ||||| || | || | ||| || ||
Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799
Query 34160 AAA 34162
|||
Sbjct 435798 AAA 435796
>seq86
Length=5199016
Score = 125 bits (138), Expect = 9e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 122733 CTGTTTCTTATACCATA 122749
Score = 104 bits (114), Expect = 3e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || |||||||| || | || || || | | ||| || || || || || || |
Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||||| |||||| || || ||||| || || ||||| ||||
Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | || ||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 127173 GTTTATTTGA 127182
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665
Query 63383 CGGTTCCAAGTATATGGC 63400
|| |||| ||| || ||
Sbjct 131666 AGGCTCCAGGTAAATAGC 131683
>seq54
Length=5886867
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| || || | ||| || ||||||||||| || ||||| |||||||| || |
Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| || ||||| ||||
Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062
Query 33724 C 33724
|
Sbjct 1575063 C 1575063
>seq2
Length=16785053
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| ||| ||| | ||||| || || |||||||||| || |||
Sbjct 16333170 GTTACTTTCTATGATGTATATATTGTTCTGCAAGCGTTTATACTGACTACTGCTGTATTT 16333229
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||| |||||||| |||||||||||||| ||| ||| | ||||
Sbjct 16333230 CTTGGTTTGACTGTATATACACTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 16333288
Score = 86.0 bits (94), Expect = 8e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||| ||||||||||| |||||||||| ||||| ||||| || ||||| ||||||
Sbjct 16311598 TGCTCCTCGATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 16311657
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 16311658 ATCCGAATGG 16311667
>seq64
Length=5459255
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || |||||||||||||| ||||| || || | || ||
Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| ||
Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| |
Sbjct 1601680 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 1601621
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
||||||||||| || || |||||||
Sbjct 1601620 TATTGGATTGGAAAGATGACAAATC 1601596
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || |||| || ||||||
Sbjct 1605364 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 1605305
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
|| || || |||| | || || ||||| | | || ||| || ||||
Sbjct 1605304 TACTTCTCATCTGACTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 1605256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629726363047920
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