Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq923 374 1e-98 seq61 192 7e-44 seq86 125 9e-24 seq54 114 2e-20 seq2 107 2e-18 seq64 98.7 1e-15 >seq923 Length=521203 Score = 374 bits (414), Expect = 1e-98 Identities = 374/481 (78%), Gaps = 7/481 (1%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||||||||||||||| |||||||||| ||||| ||||| || ||||| |||||| Sbjct 162355 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 162296 Query 188232 ATACGAATGGCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACA 188290 || |||||||| |||||||||||||||||| | || ||| ||| ||| ||| ||||| Sbjct 162295 ATCCGAATGGCCTTTCTAAGAAAAGTCTACAGCATTCTTTCTCTGCAAGTTCTCTTAACT 162236 Query 188291 ACGGCAACAGCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAGT 188350 || | || ||| | | |||||||||||||| | || |||||||| |||| | || Sbjct 162235 ACAGTGACGGCTTCTTT-TTTTTATACTTTGAGTCTATATGGACATTTGTACATGAAAGC 162177 Query 188351 CCTGTTCTAATATTGGCATCAATGTTCGGATCTATAGGCTTGATTTTCGCATTGACTTTA 188410 |||| |||| |||| | | |||| | | || |||||||| ||||||||| || Sbjct 162176 CCTGCCTTAATTTTGGTGTTTGCCCTTGGATATTTGGGTTTGATTTTAGCATTGACTGTA 162117 Query 188411 CACAGACATAAACATCCCCTGAATCTGTACCTACTTTGTGGATTTACACTGTTAGAATCT 188470 |||||||||| |||||||| || |||||||| |||| |||||||||||| || ||| || Sbjct 162116 AACAGACATAAGCATCCCCTTAACCTGTACCTCCTTTTTGGATTTACACTATTTGAAGCT 162057 Query 188471 CTAACGCTGGCCTCTGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATG 188530 || || |||||| ||||||||||||||||||| |||| | | ||||| || || Sbjct 162056 CTGACTGTGGCCTTTGTTGTTACTTTCTATGAT----GTAT-ATATTGCAAGCGTTTATA 162002 Query 188531 TTGACTACTGCAGTGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTC 188590 |||||||||| | ||||||| | || || || ||| |||||||| |||||||||||| Sbjct 162001 CTGACTACTGCTTTATTTCTTGGTTTGTCTGTATATACACTACAATCTAAGAGAGATTTC 161942 Query 188591 AGTAAACTTGTAACAGGATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAGTCTTG 188650 || ||| ||| | ||||| ||||||| | ||| |||||||| ||||||||| |||| Sbjct 161941 AGCAAATTTGGAGCAGGACTGTTTGCGGTTTTGTGGATTTTGTGCTTGTCAGGAACCTTG 161882 Query 188651 A 188651 | Sbjct 161881 A 161881 >seq61 Length=5536230 Score = 192 bits (212), Expect = 7e-44 Identities = 407/603 (67%), Gaps = 11/603 (2%) Strand=Plus/Minus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 |||||| ||||||| ||| || || || ||| | | |||||| |||| |||| ||| Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 | |||| |||||| || ||||| |||| | | | ||||| ||||| | | | Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745 || || | |||| ||||||||| | ||||||||||| | || | || ||||| | Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214 Query 33746 GGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33802 || |||| ||||| |||||||| |||| ||| ||| | |||||||| Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154 Query 33803 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862 ||| | |||| | ||||| | | || | || |||||||| | |||| ||||| Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094 Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922 | ||||||||||||||| ||||| ||||||| ||||| | || || || | ||||| Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034 Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982 | ||| || ||||||| |||| | | | |||| | | |||||||| ||||| Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTCTGG 34039 ||||| | ||| ||||| || |||| || || | |||||||| |||| || || Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917 Query 34040 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 | || | ||| | | || || || || | | |||| || || |||||| ||| Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859 Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159 || ||||| || || ||| |||| | ||| | ||||| || | || | ||| || || Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799 Query 34160 AAA 34162 ||| Sbjct 435798 AAA 435796 >seq86 Length=5199016 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 122733 CTGTTTCTTATACCATA 122749 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || | | ||| || || || || || || | Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| || || ||||| || || ||||| |||| Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 127173 GTTTATTTGA 127182 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 131666 AGGCTCCAGGTAAATAGC 131683 >seq54 Length=5886867 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||||||||| || ||||| |||||||| || | Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || ||||| |||| Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062 Query 33724 C 33724 | Sbjct 1575063 C 1575063 >seq2 Length=16785053 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| | ||||| || || |||||||||| || ||| Sbjct 16333170 GTTACTTTCTATGATGTATATATTGTTCTGCAAGCGTTTATACTGACTACTGCTGTATTT 16333229 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || ||| |||||||| |||||||||||||| ||| ||| | |||| Sbjct 16333230 CTTGGTTTGACTGTATATACACTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 16333288 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| ||||||||||| |||||||||| ||||| ||||| || ||||| |||||| Sbjct 16311598 TGCTCCTCGATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 16311657 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 16311658 ATCCGAATGG 16311667 >seq64 Length=5459255 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || |||||||||||||| ||||| || || | || || Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| || Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 1601680 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 1601621 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 ||||||||||| || || ||||||| Sbjct 1601620 TATTGGATTGGAAAGATGACAAATC 1601596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || |||| || |||||| Sbjct 1605364 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 1605305 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| | || || ||||| | | || ||| || |||| Sbjct 1605304 TACTTCTCATCTGACTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 1605256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629726363047920