Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq64 114 1e-20 seq86 102 8e-17 seq54 98.7 9e-16 >seq64 Length=5459255 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 1613573 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCT 1613514 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 1613513 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 1613454 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1613453 CCACCACTCTTTCCCC 1613438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 1606284 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 1606225 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 1606224 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 1606179 >seq86 Length=5199016 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 122733 CTGTTTCTTATACCAT 122748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 139174 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 139233 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | ||| |||||||| | | Sbjct 139234 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACCCTCATCAAC 139293 Query 38533 ATATGTTGTGGTCTTTCT 38550 |||||||||||||||||| Sbjct 139294 ATATGTTGTGGTCTTTCT 139311 >seq54 Length=5886867 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || || || || Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 1575065 ACAACCCGTTCGCC 1575078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468456928326160