Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq923 522 3e-143 seq61 183 4e-41 seq2 158 2e-33 seq86 131 2e-25 seq54 123 3e-23 seq64 102 1e-16 >seq923 Length=521203 Score = 522 bits (578), Expect = 3e-143 Identities = 534/696 (77%), Gaps = 6/696 (1%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||||||| || ||||||||||||||| Sbjct 161676 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAAGAATAGGTTGATGATATCCAAG 161735 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | |||| | | ||| | || | |||||| || ||| | || || | || || Sbjct 161736 TATAGGCTGATGGCAGATAATATGTACTTTTCAGGTGACAGCCTGTGCATCAAGGAATGT 161795 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||| |||||||| ||||| | |||||| || | |||| || ||||| |||| Sbjct 161796 GTGTCATAGACGATGAATCCACAGAAAAGAAGGGCGCCCATGGCAGCCAAGACCAACTCC 161855 Query 9411 ACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAAAGTA 9470 | ||||| ||| | | ||||| | |||| ||||||||| |||||||||||| Sbjct 161856 ATTGTTTGACTATAGAAAAATAACTTCAAGGTTCCTGACAAGCACAAAATCCACAAAACC 161915 Query 9471 ACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTC 9530 |||||| ||||||||||| ||| |||||||||||||| |||||||| |||||| ||| | Sbjct 161916 GCAAACAGTCCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGTGTATATACAGAC 161975 Query 9531 AGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAG 9590 | | ||||||| | ||||||||||| || || ||||||| | || ||||||||| Sbjct 161976 AAACCAAGAAATAAAGCAGTAGTCAGTATAAACGCTTGCA-----ATATATACATCATAG 162030 Query 9591 AAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAGGTAT 9650 |||||||||||| |||||| || |||| ||| | |||||||||||| |||| ||||| Sbjct 162031 AAAGTAACAACAAAGGCCACAGTCAGAGCTTCAAATAGTGTAAATCCAAAAAGGAGGTAC 162090 Query 9651 AAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGATACG 9710 | || |||||||| |||||||||| || ||||||||| |||||||| || | | || | Sbjct 162091 AGGTTAAGGGGATGCTTATGTCTGTTTACAGTCAATGCTAAAATCAAACCCAAATATCCA 162150 Query 9711 AACATTGATGCCAATATTAGAACAGGACTCCCTTGTATAATTTTCCGCATGCAGTCAAAG 9770 | | |||| |||| |||| || | |||| || | ||| || | |||||| Sbjct 162151 AGGGCAAACACCAAAATTAAGGCAGGGCTTTCATGTACAAATGTCCATATAGACTCAAAG 162210 Query 9771 TATAAAAATACTGCAGTTGTTGCCGTTGTTAAAAGAAATTGTAGACAAAGGATACCGTAG 9830 |||||||| | | || || | || ||||| |||| ||| ||| |||| || | |||| Sbjct 162211 TATAAAAA-AAAGAAGCCGTCACTGTAGTTAAGAGAACTTGCAGAGAAAGAATGCTGTAG 162269 Query 9831 ACTTTTCTTAGAAATGCCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAG 9890 |||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||| Sbjct 162270 ACTTTTCTTAGAAAGGCCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAG 162329 Query 9891 TTGAAGTCGTCCTCGATGGAGGAGCACGCGTAGAGG 9926 ||||| |||||||||||||||||||| | |||| || Sbjct 162330 TTGAAATCGTCCTCGATGGAGGAGCAGGGGTAGCGG 162365 >seq61 Length=5536230 Score = 183 bits (202), Expect = 4e-41 Identities = 405/603 (67%), Gaps = 11/603 (2%) Strand=Plus/Minus Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 36201 |||||| ||||||| ||| || || || ||| ||| |||||| |||| |||| ||| Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334 Query 36202 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 |||||| |||||| || ||||| |||| | | | ||||| ||||| || || | Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 36321 || |||| |||| |||||||| | || |||||||| | || | || ||||| | Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214 Query 36322 GGCAC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 || |||| ||||| |||||||| |||| ||| ||| | |||||||| Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 |||| || | | ||||| | | || | || |||||||| | | || || || Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 | ||||||||||||||| ||||| ||||||| ||||| |||| || || | ||||| Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558 | ||| || ||||||| |||| | | | |||| | | |||||||| ||||| Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977 Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTTTGG 36615 || || | ||| ||||| || |||| || || | |||||||| |||| | || Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917 Query 36616 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 | || | ||| | | || || || || | | |||| || || |||||| ||| Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859 Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 36735 || ||||| || || ||| |||| | ||| | ||||| || | || | || || || Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799 Query 36736 AAA 36738 ||| Sbjct 435798 AAA 435796 >seq2 Length=16785053 Score = 158 bits (174), Expect = 2e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||||||| || ||||||||||||||| Sbjct 16339830 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAAGAATAGGTTGATGATATCCAAG 16339771 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | |||| | ||||| || || |||||||| || ||| | || || | ||||| Sbjct 16339770 TACAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGACAGCCTGTGCATCAAGGAGTGT 16339711 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | |||||| || | |||| || ||||| |||| Sbjct 16339710 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCGCCCATGGCAGCCAAGACCAACTCC 16339651 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||||| ||| | | ||||| Sbjct 16339650 ATTGTTTGACTATAGAAAAATA 16339629 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| |||||||| |||||| |||||| | ||||| Sbjct 16333288 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGTGTATATACAGTCAAACCAAGA 16333229 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| ||| | || ||||||||||||||||| Sbjct 16333228 AATACAGCAGTAGTCAGTATAAACGCTTGCAGAACAATATATACATCATAGAAAGTAAC 16333170 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 16311667 CCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 16311608 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 | |||||||| | |||| || Sbjct 16311607 TCGAGGAGCAGGGGTAGCGG 16311588 >seq86 Length=5199016 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 122733 CTGTTTCTTATACCATA 122749 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || | ||||| || || || || || || | Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | || ||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 127173 GTTTATTTGA 127182 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 131666 AGGCTCCAGGTAAATAGC 131683 >seq54 Length=5886867 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| |||||||||||||| || ||||| |||||||| || | Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || || |||| Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062 Query 36300 C 36300 | Sbjct 1575063 C 1575063 >seq64 Length=5459255 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| ||||||||||||||||| ||||| || || | || || Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658077455442760