Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq923 522 3e-143
seq61 183 4e-41
seq2 158 2e-33
seq86 131 2e-25
seq54 123 3e-23
seq64 102 1e-16
>seq923
Length=521203
Score = 522 bits (578), Expect = 3e-143
Identities = 534/696 (77%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | ||||||||| | | ||||| |||||||| || |||||||||||||||
Sbjct 161676 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAAGAATAGGTTGATGATATCCAAG 161735
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|| | |||| | | ||| | || | |||||| || ||| | || || | || ||
Sbjct 161736 TATAGGCTGATGGCAGATAATATGTACTTTTCAGGTGACAGCCTGTGCATCAAGGAATGT 161795
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
|||||||||| |||||||| ||||| | |||||| || | |||| || ||||| ||||
Sbjct 161796 GTGTCATAGACGATGAATCCACAGAAAAGAAGGGCGCCCATGGCAGCCAAGACCAACTCC 161855
Query 9411 ACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAAAGTA 9470
| ||||| ||| | | ||||| | |||| ||||||||| ||||||||||||
Sbjct 161856 ATTGTTTGACTATAGAAAAATAACTTCAAGGTTCCTGACAAGCACAAAATCCACAAAACC 161915
Query 9471 ACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTC 9530
|||||| ||||||||||| ||| |||||||||||||| |||||||| |||||| ||| |
Sbjct 161916 GCAAACAGTCCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGTGTATATACAGAC 161975
Query 9531 AGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAG 9590
| | ||||||| | ||||||||||| || || ||||||| | || |||||||||
Sbjct 161976 AAACCAAGAAATAAAGCAGTAGTCAGTATAAACGCTTGCA-----ATATATACATCATAG 162030
Query 9591 AAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAGGTAT 9650
|||||||||||| |||||| || |||| ||| | |||||||||||| |||| |||||
Sbjct 162031 AAAGTAACAACAAAGGCCACAGTCAGAGCTTCAAATAGTGTAAATCCAAAAAGGAGGTAC 162090
Query 9651 AAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGATACG 9710
| || |||||||| |||||||||| || ||||||||| |||||||| || | | || |
Sbjct 162091 AGGTTAAGGGGATGCTTATGTCTGTTTACAGTCAATGCTAAAATCAAACCCAAATATCCA 162150
Query 9711 AACATTGATGCCAATATTAGAACAGGACTCCCTTGTATAATTTTCCGCATGCAGTCAAAG 9770
| | |||| |||| |||| || | |||| || | ||| || | ||||||
Sbjct 162151 AGGGCAAACACCAAAATTAAGGCAGGGCTTTCATGTACAAATGTCCATATAGACTCAAAG 162210
Query 9771 TATAAAAATACTGCAGTTGTTGCCGTTGTTAAAAGAAATTGTAGACAAAGGATACCGTAG 9830
|||||||| | | || || | || ||||| |||| ||| ||| |||| || | ||||
Sbjct 162211 TATAAAAA-AAAGAAGCCGTCACTGTAGTTAAGAGAACTTGCAGAGAAAGAATGCTGTAG 162269
Query 9831 ACTTTTCTTAGAAATGCCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAG 9890
|||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||
Sbjct 162270 ACTTTTCTTAGAAAGGCCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAG 162329
Query 9891 TTGAAGTCGTCCTCGATGGAGGAGCACGCGTAGAGG 9926
||||| |||||||||||||||||||| | |||| ||
Sbjct 162330 TTGAAATCGTCCTCGATGGAGGAGCAGGGGTAGCGG 162365
>seq61
Length=5536230
Score = 183 bits (202), Expect = 4e-41
Identities = 405/603 (67%), Gaps = 11/603 (2%)
Strand=Plus/Minus
Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 36201
|||||| ||||||| ||| || || || ||| ||| |||||| |||| |||| |||
Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334
Query 36202 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261
|||||| |||||| || ||||| |||| | | | ||||| ||||| || || |
Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274
Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 36321
|| |||| |||| |||||||| | || |||||||| | || | || ||||| |
Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214
Query 36322 GGCAC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378
|| |||| ||||| |||||||| |||| ||| ||| | ||||||||
Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154
Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438
|||| || | | ||||| | | || | || |||||||| | | || || ||
Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094
Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498
| ||||||||||||||| ||||| ||||||| ||||| |||| || || | |||||
Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034
Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558
| ||| || ||||||| |||| | | | |||| | | |||||||| |||||
Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977
Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTTTGG 36615
|| || | ||| ||||| || |||| || || | |||||||| |||| | ||
Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917
Query 36616 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675
| || | ||| | | || || || || | | |||| || || |||||| |||
Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859
Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 36735
|| ||||| || || ||| |||| | ||| | ||||| || | || | || || ||
Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799
Query 36736 AAA 36738
|||
Sbjct 435798 AAA 435796
>seq2
Length=16785053
Score = 158 bits (174), Expect = 2e-33
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | ||||||||| | | ||||| |||||||| || |||||||||||||||
Sbjct 16339830 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAAGAATAGGTTGATGATATCCAAG 16339771
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|| | |||| | ||||| || || |||||||| || ||| | || || | |||||
Sbjct 16339770 TACAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGACAGCCTGTGCATCAAGGAGTGT 16339711
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
||||||||||| |||||||| ||||| | |||||| || | |||| || ||||| ||||
Sbjct 16339710 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCGCCCATGGCAGCCAAGACCAACTCC 16339651
Query 9411 ACTGTTTCACTTTGCACAAATA 9432
| ||||| ||| | | |||||
Sbjct 16339650 ATTGTTTGACTATAGAAAAATA 16339629
Score = 138 bits (152), Expect = 1e-27
Identities = 102/119 (86%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| |||||||| |||||| |||||| | |||||
Sbjct 16333288 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGTGTATATACAGTCAAACCAAGA 16333229
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| || ||||||||||| || || ||||||| ||| | || |||||||||||||||||
Sbjct 16333228 AATACAGCAGTAGTCAGTATAAACGCTTGCAGAACAATATATACATCATAGAAAGTAAC 16333170
Score = 100 bits (110), Expect = 4e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||||||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 16311667 CCATTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 16311608
Query 9907 TGGAGGAGCACGCGTAGAGG 9926
| |||||||| | |||| ||
Sbjct 16311607 TCGAGGAGCAGGGGTAGCGG 16311588
>seq86
Length=5199016
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 122733 CTGTTTCTTATACCATA 122749
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
|||| || || ||||| || | || || || | ||||| || || || || || || |
Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
||||||||||||| ||||||| |||||| || || ||||| | || ||||| ||||
Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | || ||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172
Query 65599 TCTTATTAGA 65608
||||| ||
Sbjct 127173 GTTTATTTGA 127182
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 131666 AGGCTCCAGGTAAATAGC 131683
>seq54
Length=5886867
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | ||| |||||||||||||| || ||||| |||||||| || |
Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| |||||||| || ||||||||||| |||||||| || || || ||||
Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062
Query 36300 C 36300
|
Sbjct 1575063 C 1575063
>seq64
Length=5459255
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| ||||||||||||||||| ||||| || || | || ||
Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| ||
Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658077455442760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |