Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq56 113 4e-20
seq694 86.0 6e-12
seq101 86.0 6e-12
seq26 84.2 2e-11
>seq56
Length=5723395
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| | || |||| || | ||| | || ||||| || || ||||| || || |
Sbjct 4238928 CCGCCCCTCAAGCGCAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4238987
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| | ||||| |||||||| || ||| ||||||| | ||||| || || ||
Sbjct 4238988 AGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239047
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| ||||| || ||| || ||| | | || | ||||| |||||||||||
Sbjct 4239048 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239107
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||||||||| || || ||||| || |||||
Sbjct 4239108 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239154
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||| | ||| ||||| || || ||||| || || || |||| | ||||| |||||
Sbjct 4239407 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4239466
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||| || ||| ||||||| | ||||| || || || ||||| |||||||| ||| ||
Sbjct 4239467 TTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTT 4239526
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | ||||| ||||||||||||| | ||| | |||||||||||
Sbjct 4239527 CGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 4239586
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
||| || || ||||| || |||||
Sbjct 4239587 CAAGGTCTTCACGAAGATCTGCAT 4239610
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||| | ||| ||||| || || ||||| || || || |||| | ||||| |||||
Sbjct 4239635 GTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4239694
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||| || ||| ||||||| | ||||| || || || ||||| |||||||| ||| ||
Sbjct 4239695 TTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTT 4239754
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | ||||| ||||||||||||| | ||| | ||||| |||||
Sbjct 4239755 CGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGT 4239814
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
||| || || ||||| || |||||
Sbjct 4239815 CAAGGTCTTCACGAAGATCTGCAT 4239838
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || || || || || || |||| | ||||| |||||||| ||
Sbjct 4239186 GTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 4239245
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| |||||||| ||| || ||
Sbjct 4239246 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCCTTG 4239305
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | |||||||||||||| ||
Sbjct 4239306 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTC 4239365
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 4239366 TTCACGAAGATCTGCAT 4239382
>seq694
Length=814564
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || |||| ||||||||||| || || || || | || | ||||| || ||
Sbjct 212177 TGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 212235
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| |||| || | |||||||| ||||| || ||||| || || ||| | |
Sbjct 212236 CTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 212294
Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | |||| | ||| | ||| || | ||| || ||||||| || | ||||| || |
Sbjct 212295 TGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCG 212354
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | ||||| ||||| || |||||
Sbjct 212355 TTAGGGTTTTCACGAAAATCTGCAT 212379
>seq101
Length=4626942
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||||||||| ||||| ||||| | |||| ||||| ||||| || ||
Sbjct 1982782 GTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 1982841
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | || || | ||||| || || || ||||| || || || ||| || ||
Sbjct 1982842 GCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 1982901
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | ||| | |||||| |||| ||||| || | ||| | ||||||||||||| ||
Sbjct 1982902 ACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTC 1982961
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 1982962 TTCACGAAGATCTGCAT 1982978
>seq26
Length=7528108
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/208 (71%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCA---TTGTGC-TCGAGTCTTCGAG 139617
|||| || ||||| ||||||||||| || || || | || | || | ||||| ||
Sbjct 6810791 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGTACATCCA-TCTTCCAG 6810733
Query 139618 CTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGAT 139677
|| || |||||| ||||||| | |||||||||||||| || ||||| || || |||
Sbjct 6810732 TTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTTATC-CTGAA 6810674
Query 139678 TTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGC 139736
| || | |||| | ||| | ||| || | ||| || |||| | || | ||||| |
Sbjct 6810673 TCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTCC 6810614
Query 139737 CGGTCAACGTTTTTACGAATATTTGCAT 139764
| || | ||||| | |||||| |||||
Sbjct 6810613 CCGTTAGGGTTTTCATGAATATCTGCAT 6810586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495992138928800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |