Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq54 95.1 1e-14
seq61 84.2 2e-11
>seq54
Length=5886867
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1573465 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTGGACATCACTCCCATCCT 1573523
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | |||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1573524 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1573583
Query 13643 CATAAAATCAAATGGATTT 13661
|||||| ||||||||||||
Sbjct 1573584 CATAAAGTCAAATGGATTT 1573602
>seq61
Length=5536230
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || ||||| | ||||| | | |||| || |||||||||||||| || |||
Sbjct 436682 GACATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCT 436623
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|||||||| ||||| |||||||| |||| |||||||
Sbjct 436622 TCCAGTGAAATATTCTCCATAAAGTCAAGTGGATTT 436587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479658505402600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |