Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq101 98.7 6e-16
seq292 84.2 1e-11
>seq101
Length=4626942
Score = 98.7 bits (108), Expect = 6e-16
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | |||| |||| ||||| || ||||||||||| || |||||||||||
Sbjct 1982752 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAA 1982811
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| | || | || |||| ||||| || ||| || | | |||||||| | |||
Sbjct 1982812 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982871
Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||| || || || | | | ||| || || ||| || |||||| ||||||
Sbjct 1982872 ATGCCCTCCTTATCCTGGATCTTGGCC---TTCACATTTTCGATGGTGTCGCTGGGTTCC 1982928
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||||| ||||| || || || || || || || ||||| || ||||||
Sbjct 1982929 ACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979
>seq292
Length=3256830
Score = 84.2 bits (92), Expect = 1e-11
Identities = 147/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
|||||| |||| || |||||||| || |||||||||||||||| | || | || ||
Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276
|| || || || ||| || | ||| |||||||| | ||| ||||| || || ||
Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
| | | || ||| || | | ||| ||||| |||| | || || || || || ||
Sbjct 1957878 GATTTTGGC---TTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 1957934
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || || || || || |||||
Sbjct 1957935 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318732575552922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |