Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq101 98.7 6e-16 seq292 84.2 1e-11 >seq101 Length=4626942 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| |||| ||||| || ||||||||||| || ||||||||||| Sbjct 1982752 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAA 1982811 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 1982812 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982871 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| || || || | | | ||| || || ||| || |||||| |||||| Sbjct 1982872 ATGCCCTCCTTATCCTGGATCTTGGCC---TTCACATTTTCGATGGTGTCGCTGGGTTCC 1982928 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| ||||| || || || || || || || ||||| || |||||| Sbjct 1982929 ACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979 >seq292 Length=3256830 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| |||| || |||||||| || |||||||||||||||| | || | || || Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 || || || || ||| || | ||| |||||||| | ||| ||||| || || || Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | || ||| || | | ||| ||||| |||| | || || || || || || Sbjct 1957878 GATTTTGGC---TTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 1957934 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || ||||| Sbjct 1957935 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318732575552922