Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq43 109 5e-19 seq81 82.4 7e-11 >seq43 Length=9688235 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| ||| | || ||||| ||||| ||||| Sbjct 9130254 GGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGATGCCCCAGGCT 9130195 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || |||| || || | || |||||||| || || ||||| |||||||||||||| Sbjct 9130194 GAGAACCACGACCCAGAAGTCAAGGAACACGTGAACTCGCTGGGGGAAAAGCTGAAGACC 9130135 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | || || | ||||| ||||| Sbjct 9130134 CTCAGGCTGAGGCTGCGGCGCTG 9130112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || ||||| || ||||| |||||||||||||||||||| ||||||||||||| Sbjct 9127988 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 9127929 Query 127439 TCGAGACTTACATG 127452 | || || |||||| Sbjct 9127928 TAGAAACGTACATG 9127915 >seq81 Length=4962868 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 5638 GCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGC 5697 ||| || || ||||| || || ||||| || || | || || | ||||| ||||| || Sbjct 2076418 GCCAAAATTAAACAGTACGACACCCACATTTCCTCTATAATCTTCATCTATGACGCCAGC 2076359 Query 5698 GCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCA 5757 || || ||||||||||| || | |||| ||| || |||||||| || | || ||| | Sbjct 2076358 TCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGGGGAGCTACTCTTCCATAGAA 2076299 Query 5758 CCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 |||| ||||| || ||| | |||||| Sbjct 2076298 CCCAGAAGGAAGAGCTACCTGAATGTCCGT 2076269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429993658713368