Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq694 89.7 4e-13
seq517 86.0 5e-12
seq695 84.2 2e-11
>seq694
Length=814564
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| ||| || ||||||||||||||| ||||
Sbjct 212152 ACCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGA 212211
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || ||||| ||||| || | | |||| | ||||||||| ||
Sbjct 212212 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGG 212271
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| ||| || ||| | | |||| ||||| | | ||
Sbjct 212272 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 212331
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | || ||||| || || || || |||||||| |||||||||||| ||
Sbjct 212332 CTCAAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 212383
>seq517
Length=1171097
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| ||| ||||||||||| |||||| | ||
Sbjct 1142641 ACCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGA 1142582
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || ||||| ||||| || | | || | | ||||||||| ||
Sbjct 1142581 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 1142522
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| ||| || ||| | | |||| ||||| | | ||
Sbjct 1142521 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 1142462
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || ||||| || || || || |||||||| |||||||||||| ||
Sbjct 1142461 CTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 1142410
>seq695
Length=815165
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/233 (68%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| ||| |||||||||||||||||| ||||
Sbjct 16911 ACCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 16852
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || ||||| |||| || | | || | | ||||||||| ||
Sbjct 16851 CAAAGTACGTCCATCTTCCAGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 16792
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| ||| || ||| | | |||| ||||| | | ||
Sbjct 16791 AATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 16732
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC-ACAAAAATCTGCATCGTG 48730
||||| || ||||| || || || || |||||| || |||||||||||| ||
Sbjct 16731 CTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCAACGAAAATCTGCATCCTG 16679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421191702085589
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |