Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq863 152 7e-32 seq9 125 1e-23 >seq863 Length=591582 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || || | || ||| ||| ||||| || || ||||||| ||||| |||||| Sbjct 189515 GTCTGGAATAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGCACATCACACACT 189456 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || ||||||||||| ||||||||||||| || || Sbjct 189455 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAACCCGAAG 189396 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | ||| || |||||||| | | Sbjct 189395 ACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGGGGTGGGTAGATCATCTCC 189336 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| ||| ||||| | ||| ||||||| || || ||||| Sbjct 189335 ACCTGAGTATCCTTGACTGTGGGAGGATACACCTCCCCATCAAT 189292 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||| ||||| ||||||||||| ||||| | || ||||| ||| ||| | || Sbjct 188491 TCTTACGCCATGGCCCAGTCCTTTGGTGAAACCTGGCCCTCGTTTATGATCCGTCTTGAA 188432 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 188431 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 188372 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 188371 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTAGAATCAGGAAGCTC 188312 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 188311 TTTCTTGCCTGAAAAATGAGAA 188290 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || |||||||| || | || || || || ||| || | Sbjct 187877 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 187818 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| || || |||||||||||| || | |||||| ||||||| | Sbjct 187817 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 187758 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| || || ||||| Sbjct 187757 GGTGGACTCTCAATCAAATGTGACCTGGCTGAA 187725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | |||| ||||| || | |||||||| || || | Sbjct 190123 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCC 190064 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | ||| || |||||||| | || | | | | |||| | ||| || | Sbjct 190063 AGCAATATAGAGTTGTTGTAGATAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGC 190004 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || |||| || | ||||||||| || | |||||||||| | | |||||| Sbjct 190003 AAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCTATACGG 189944 Query 9502 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 ||||||||||||||| | | ||| ||||| || || | |||| || || ||||| Sbjct 189943 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 189885 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || | ||||| ||||| Sbjct 189884 ATAGCCACTCAAGTGCTGTACATA 189861 >seq9 Length=9398461 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || || ||||| || || |||||||| |||| | Sbjct 7782037 TCTTGACCATATTGAAGCCCATCTCACCACCAAAGGTACTCGGCTTCCAGTACTCCGGAG 7782096 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | |||||| ||||||||||| |||||||| | || | || | Sbjct 7782097 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 7782156 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| ||||||| Sbjct 7782157 TCTCTCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGGCCTGGGTAGAACTCCA 7782216 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||||||| || || || | ||||| || || ||| | || |||| Sbjct 7782217 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCGGCGGCAATCTCCGTCTCCCCTG 7782273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708422161326160