Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq863 152 7e-32
seq9 125 1e-23
>seq863
Length=591582
Score = 152 bits (168), Expect = 7e-32
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| || || | || ||| ||| ||||| || || ||||||| ||||| ||||||
Sbjct 189515 GTCTGGAATAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGCACATCACACACT 189456
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||||| ||||| || || ||||||||||| ||||||||||||| || ||
Sbjct 189455 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAACCCGAAG 189396
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || ||||| | |||| | ||| || || | ||| || |||||||| | |
Sbjct 189395 ACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGGGGTGGGTAGATCATCTCC 189336
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857
||||| ||| ||||| | ||| ||||||| || || |||||
Sbjct 189335 ACCTGAGTATCCTTGACTGTGGGAGGATACACCTCCCCATCAAT 189292
Score = 113 bits (124), Expect = 6e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||| ||||| ||||||||||| ||||| | || ||||| ||| ||| | ||
Sbjct 188491 TCTTACGCCATGGCCCAGTCCTTTGGTGAAACCTGGCCCTCGTTTATGATCCGTCTTGAA 188432
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || ||||| || ||| |||| || |||||||| | || ||||| ||||||||
Sbjct 188431 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 188372
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
||| |||| | || | |||||| ||||||||||| | | | ||| || || |
Sbjct 188371 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTAGAATCAGGAAGCTC 188312
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| || |||| || |||||
Sbjct 188311 TTTCTTGCCTGAAAAATGAGAA 188290
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || |||||||| || | || || || || ||| || |
Sbjct 187877 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 187818
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|| ||||||||||| || || |||||||||||| || | |||||| ||||||| |
Sbjct 187817 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 187758
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || || |||||||||| || || |||||
Sbjct 187757 GGTGGACTCTCAATCAAATGTGACCTGGCTGAA 187725
Score = 86.0 bits (94), Expect = 9e-12
Identities = 179/264 (68%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | |||| ||||| || | |||||||| || || |
Sbjct 190123 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCC 190064
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441
| | ||| || |||||||| | || | | | | |||| | ||| || |
Sbjct 190063 AGCAATATAGAGTTGTTGTAGATAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGC 190004
Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501
|| | || |||| || | ||||||||| || | |||||||||| | | ||||||
Sbjct 190003 AAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCTATACGG 189944
Query 9502 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560
||||||||||||||| | | ||| ||||| || || | |||| || || |||||
Sbjct 189943 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 189885
Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584
||||| || | ||||| |||||
Sbjct 189884 ATAGCCACTCAAGTGCTGTACATA 189861
>seq9
Length=9398461
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| || || |||| || || || ||||| || || |||||||| |||| |
Sbjct 7782037 TCTTGACCATATTGAAGCCCATCTCACCACCAAAGGTACTCGGCTTCCAGTACTCCGGAG 7782096
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | |||||| ||||||||||| |||||||| | || | || |
Sbjct 7782097 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 7782156
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||||| ||| ||| || ||| |||| | | || | ||| |||||||
Sbjct 7782157 TCTCTCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGGCCTGGGTAGAACTCCA 7782216
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| ||||||||||| || || || | ||||| || || ||| | || ||||
Sbjct 7782217 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCGGCGGCAATCTCCGTCTCCCCTG 7782273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708422161326160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |