Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq56 107 2e-18
seq292 95.1 1e-14
seq101 93.3 4e-14
seq108 87.8 2e-12
>seq56
Length=5723395
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | ||||| ||||| ||| || ||||| || | || || || |
Sbjct 4239156 CCCCCTCTGAGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAC 4239215
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| || ||||||| | || ||||| || || ||
Sbjct 4239216 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239275
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 4239276 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239335
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || || || | || ||||| |||||||||||||
Sbjct 4239336 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 4239384
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | ||||| ||||| || || ||||| || | ||| || || |
Sbjct 4239384 CCCCCTCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4239443
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| || ||||||| | || ||||| || || ||
Sbjct 4239444 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239503
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 4239504 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239563
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || || || | || ||||| |||||||||||||
Sbjct 4239564 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 4239612
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | ||||| ||||| || || ||||| || | ||| || || |
Sbjct 4239612 CCCCCTCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4239671
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| || ||||||| | || ||||| || || ||
Sbjct 4239672 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239731
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 4239732 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239791
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 4239792 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 4239838
Score = 100 bits (110), Expect = 3e-16
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829
|| || | || || || ||||| |||| || | ||||| ||| || ||||| || | ||
Sbjct 4238917 AACTTAAGACACCGCCCCTCAAGCGCAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGT 4238976
Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889
| || || || ||| ||| ||||||||||| || ||||||| | || ||||
Sbjct 4238977 TGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCT 4239036
Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949
| || || || || || ||||| || | || || | |||||| ||| ||||||
Sbjct 4239037 GGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTTCCCTTTGACGTTCTCGATGGTGTCAC 4239096
Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| | || || || | |||||||| || || || | || ||||| |||||||||||||
Sbjct 4239097 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 4239156
>seq292
Length=3256830
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| || || || || || | || ||||| || |||| | ||| ||
Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||||||| || |||| || | | ||||| || || || || || || || || |
Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||||| || || ||| | | |||||| | | ||||| || | |||||||| ||
Sbjct 1957878 GATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 1957937
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || |||||||||||||||||
Sbjct 1957938 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
>seq101
Length=4626942
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| |||| |||| ||| || || || || | ||| |||||
Sbjct 1982524 CCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 1982583
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| |||||||| || ||| |||| || | || ||||| || || ||
Sbjct 1982584 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982643
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || || || | || || ||||| || ||| |||||| | | || ||
Sbjct 1982644 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACT 1982703
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || || || || || ||||| |||||||||||||
Sbjct 1982704 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGC 1982752
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| |||| |||| |||| || || || ||||| | ||| |||||
Sbjct 1982752 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAA 1982811
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| |||||||| || ||| |||| || | || ||||| || || ||
Sbjct 1982812 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982871
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || || || | || || ||||| || ||| ||||| | | || ||
Sbjct 1982872 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACT 1982931
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | || ||||| || || || || || ||||| |||||||||||||
Sbjct 1982932 TCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGC 1982980
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| |||| |||| || || || || || | ||| |||||
Sbjct 1982980 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1983039
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| |||||||| || ||| |||| || | || ||||| || || ||
Sbjct 1983040 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1983099
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || || || | || || ||||| || ||| |||||| | | || ||
Sbjct 1983100 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACC 1983159
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || ||||| || || ||||| |||||||||||
Sbjct 1983160 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1983206
>seq108
Length=4373546
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | ||| | |||||||| | | | || || | || |||
Sbjct 1070447 TCTCAACACAAGATGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCACAGAGTTCGTCC 1070506
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||| || || || | ||||| ||||| ||||||| |||||||| ||||| ||
Sbjct 1070507 ATCTGCCAGTTGCTTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGAATTCCTTCCTT 1070566
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| ||| | || | || | | || | |||| |||||
Sbjct 1070567 ATCCTGGATCTTGGCCTTTACGTTTTCTACTCTATCTGAGGATTCAGCCTCAAGAGTGAT 1070626
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || ||||| ||||||||||| ||||||||
Sbjct 1070627 GGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 1070662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448226259416040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |