Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq56 107 2e-18 seq292 95.1 1e-14 seq101 93.3 4e-14 seq108 87.8 2e-12 >seq56 Length=5723395 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| ||||| ||| || ||||| || | || || || | Sbjct 4239156 CCCCCTCTGAGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAC 4239215 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| | || ||||| || || || Sbjct 4239216 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239275 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| ||| |||||| | | || || Sbjct 4239276 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239335 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 4239336 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 4239384 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| ||||| || || ||||| || | ||| || || | Sbjct 4239384 CCCCCTCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4239443 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| | || ||||| || || || Sbjct 4239444 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239503 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| ||| |||||| | | || || Sbjct 4239504 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239563 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 4239564 TCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 4239612 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| ||||| || || ||||| || | ||| || || | Sbjct 4239612 CCCCCTCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4239671 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| | || ||||| || || || Sbjct 4239672 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4239731 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || ||||||||| ||| |||||| | | || || Sbjct 4239732 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4239791 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 4239792 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 4239838 Score = 100 bits (110), Expect = 3e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || || || ||||| |||| || | ||||| ||| || ||||| || | || Sbjct 4238917 AACTTAAGACACCGCCCCTCAAGCGCAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGT 4238976 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || || ||| ||| ||||||||||| || ||||||| | || |||| Sbjct 4238977 TGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCT 4239036 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | || || || || || ||||| || | || || | |||||| ||| |||||| Sbjct 4239037 GGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTTCCCTTTGACGTTCTCGATGGTGTCAC 4239096 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | | || || || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 4239097 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 4239156 >seq292 Length=3256830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || || || || | || ||||| || |||| | ||| || Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || |||| || | | ||||| || || || || || || || || | Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || || ||| | | |||||| | | ||||| || | |||||||| || Sbjct 1957878 GATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 1957937 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 1957938 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq101 Length=4626942 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| |||| ||| || || || || | ||| ||||| Sbjct 1982524 CCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 1982583 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| |||| || | || ||||| || || || Sbjct 1982584 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982643 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || ||| |||||| | | || || Sbjct 1982644 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACT 1982703 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||| ||||||||||||| Sbjct 1982704 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGC 1982752 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| |||| || || || ||||| | ||| ||||| Sbjct 1982752 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAA 1982811 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| |||| || | || ||||| || || || Sbjct 1982812 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982871 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || ||| ||||| | | || || Sbjct 1982872 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACT 1982931 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || ||||| || || || || || ||||| ||||||||||||| Sbjct 1982932 TCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGC 1982980 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| |||| || || || || || | ||| ||||| Sbjct 1982980 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1983039 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| |||| || | || ||||| || || || Sbjct 1983040 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1983099 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || ||| |||||| | | || || Sbjct 1983100 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACC 1983159 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 1983160 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1983206 >seq108 Length=4373546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| | |||||||| | | | || || | || ||| Sbjct 1070447 TCTCAACACAAGATGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCACAGAGTTCGTCC 1070506 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || || || | ||||| ||||| ||||||| |||||||| ||||| || Sbjct 1070507 ATCTGCCAGTTGCTTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGAATTCCTTCCTT 1070566 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| ||| | || | || | | || | |||| ||||| Sbjct 1070567 ATCCTGGATCTTGGCCTTTACGTTTTCTACTCTATCTGAGGATTCAGCCTCAAGAGTGAT 1070626 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| ||||||||||| |||||||| Sbjct 1070627 GGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 1070662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448226259416040