Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq61 201 1e-46 seq86 131 2e-25 seq54 129 7e-25 seq64 107 2e-18 >seq61 Length=5536230 Score = 201 bits (222), Expect = 1e-46 Identities = 409/603 (68%), Gaps = 11/603 (2%) Strand=Plus/Minus Query 33288 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 33347 |||||| ||||||| ||| || || || ||| | | |||||| |||| |||| |||| Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334 Query 33348 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33407 |||||| |||||| || ||||| |||| | | | ||||| ||||| | | | Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274 Query 33408 TGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33467 || |||| |||| ||||||||| | ||||||||||| | || | || ||||| | Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214 Query 33468 GGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33524 || |||| ||||| |||||||| |||| ||| ||| | |||||||| Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154 Query 33525 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33584 ||| | |||| | ||||| | | || | || |||||||| | |||| ||||| Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 | ||||||||||||||| ||||| ||||||| ||||| | || || || | ||||| Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTAT 33704 | ||| || ||||||| |||| | | | ||||| || | |||||||| ||||| Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977 Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTCTGG 33761 || || | ||| ||||| || |||| || || | |||||||| |||| || || Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917 Query 33762 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 | || | ||| | | || || || || | | | || || || |||||| ||| Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859 Query 33822 TGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAAC 33881 || ||||| || || ||| |||| | ||| | |||| || | || | ||| || || Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799 Query 33882 AAA 33884 ||| Sbjct 435798 AAA 435796 >seq86 Length=5199016 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 122733 CTGTTTCTTATACCATA 122749 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 131666 AGGCTCCAGGTAAATAGC 131683 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || | ||||| || || || || || || | Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 127173 GTTTATTTGA 127182 >seq54 Length=5886867 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||||||||||| || ||||| |||||||| || | Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| || ||||| |||| Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062 Query 33446 C 33446 | Sbjct 1575063 C 1575063 >seq64 Length=5459255 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| ||||||||||||||||| ||||| || || | || || Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| || Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| Sbjct 1601681 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 1601622 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 ||||||||||| || || ||||||| Sbjct 1601621 GTATTGGATTGGAAAGATGACAAATC 1601596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || |||| || |||| Sbjct 1605366 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAA 1605307 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| | || || ||||| | | || ||| || |||| Sbjct 1605306 AATACTTCTCATCTGACTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 1605256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622856958311240