Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq86 96.9 9e-15 seq54 86.0 2e-11 >seq86 Length=5199016 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 130364 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 130305 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 130304 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 130245 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 130244 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 130212 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || ||||||||||||||||| | Sbjct 131692 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTTGATTTA 131633 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 131632 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 131573 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 131572 CCAGATCTCTTCATGAAACGAGTGGAG 131546 Score = 91.5 bits (100), Expect = 4e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | |||| || || ||||||| |||| || || || ||||||||| Sbjct 120255 CAGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTTTATAAGACTGTGTGGGAAATT 120196 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || | |||| | || | ||||| || || | |||||||| || ||| |||||| Sbjct 120195 TCACAGAAAACTGTTCTTAAGATGGCAGCTGAAAGAGGTGCTTTCATTGATCAAAGCCAG 120136 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| | ||| || |||| | || || ||| || || ||||| |||||| Sbjct 120135 TCTTTGAACATCCACATCGCTGAGCCTAACTACGGCAAACTCACTAGTATGCACTTCTAC 120076 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 120075 GGCTGGAA 120068 >seq54 Length=5886867 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 ||||| || | || || |||| || ||||| || ||||||||||| | ||||| | | Sbjct 1575075 GAACGGGTTGTGGCCTTCGCTGCCGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTC 1575017 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||| || ||||| || ||||||| | ||||| || || |||||||| ||||| | || Sbjct 1575016 AATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 1574957 Query 22608 TAGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 1574956 CAGCAGAGATGAGG 1574943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303160072762598