Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq292 95.1 1e-14 seq101 95.1 1e-14 seq694 86.0 5e-12 seq695 84.2 2e-11 >seq292 Length=3256830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || ||||| || ||||| ||| |||| ||| |||| Sbjct 1957967 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1957908 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| ||||| ||||| || ||| ||||| || ||| Sbjct 1957907 GACACCATTGAGAACGTTAAAGCCAAAATCCAAGATAAGGAGGGCATCCCCCCCGACCAG 1957848 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || |||| |||||||||||| | ||||||| | || || | ||||| || Sbjct 1957847 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACAAT 1957788 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || |||||||| || | || ||||| Sbjct 1957787 ATCCAGAAAGAGTCCACCCTGCACTTGGTG 1957758 >seq101 Length=4626942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || ||||| ||| | ||| ||| ||||| Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || || || || ||||| || ||| ||||| ||| ||| Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||||| ||| ||||| || | ||||||| | || | | ||||| ||| Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||| || | ||| |||| || | || |||| || Sbjct 1982798 ATCCAAAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGAGGTGG 1982752 >seq694 Length=814564 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || ||||| || ||||| || ||||| || | || || || Sbjct 212379 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTTGAGGTTGAACCCTCG 212320 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | | ||||| || ||| ||||| ||||| | || ||||||| Sbjct 212319 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 212260 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| || | ||| ||||| ||| | ||||||| || || | || || ||| Sbjct 212259 CAGAGACTAATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 212200 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| |||| ||| | ||| | ||||||||| | || || || Sbjct 212199 ATTCAAAAGTAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 212153 >seq695 Length=815165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTC-AAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||| ||||| || ||||| || ||||| || ||||| || |||| || || Sbjct 16683 ATGCAGATTTTCGTTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 16742 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | | | ||||| || ||| ||||| ||||| | || |||||| Sbjct 16743 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 16802 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | ||| ||||| | | | ||||||| || || | || || || Sbjct 16803 GCAGAGACTGATCTTTGCTGGCAAGCCACTGGAAGATGGACGTACTTTGTCTGACTACAA 16862 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||| ||||| ||| | ||| | ||||||||| | || || || Sbjct 16863 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 16910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425283924014680