Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq56 118 9e-22 seq101 105 5e-18 seq292 93.3 3e-14 seq1820 82.4 6e-11 >seq56 Length=5723395 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || ||||||||||| | || ||| | || Sbjct 4239627 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239686 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||||| |||||| | || |||| ||| ||||| || | |||||||||||| Sbjct 4239687 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239746 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 4239747 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239806 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || ||||||| || || || || ||||||||| Sbjct 4239807 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||||||||||||||| || ||||||||||| | || ||| | || Sbjct 4239399 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239458 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||||| |||||| | || |||| ||| ||||| || | |||||||||||| Sbjct 4239459 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239518 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 4239519 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239578 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || || || |||||||| Sbjct 4239579 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || || |||||||| | || ||| | || Sbjct 4239171 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 4239230 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||||| |||||| | || |||| ||| ||||| || | |||||||||||| Sbjct 4239231 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239290 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 4239291 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239350 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || || || |||||||| Sbjct 4239351 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||| | || ||| | || |||| ||| Sbjct 4238952 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 4239011 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| ||||| || | ||||||||| || || | | Sbjct 4239012 TTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTTC 4239071 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 || || | | | ||||| | ||||||| |||| ||||||||| || |||||| Sbjct 4239072 CCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 4239131 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || || || |||||||| Sbjct 4239132 AAGGTCTTCACGAAGATCTGCAT 4239154 >seq101 Length=4626942 Score = 105 bits (116), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| |||||||| || || |||||||| || | | || | | || Sbjct 1982994 CAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1983053 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| ||||||||| ||| ||||| || | |||||| || || Sbjct 1983054 TTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1983113 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||| ||| |||| ||||||| Sbjct 1983114 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATG 1983171 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || || || |||||||||||| Sbjct 1983172 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1983210 >seq292 Length=3256830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || || ||||| || | || || | | || Sbjct 1957756 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCT 1957815 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||||||| |||| || ||||| ||||| || | |||||| || || Sbjct 1957816 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCT 1957875 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||||| | |||||| || | |||||||| Sbjct 1957876 TGGATTTTGGCT--TTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 1957933 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || ||||| |||||||| Sbjct 1957934 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq1820 Length=90317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 16719 GCCTCAG--TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTT 16776 ||||||| ||||| || || || ||||| || || | |||||| || | | || Sbjct 66973 GCCTCAGAGTACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCG 66914 Query 16777 GGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTC 16836 | | || |||| || ||||| ||| | ||||||| ||| ||||| | | || ||| Sbjct 66913 GCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTC 66854 Query 16837 TTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACG 16894 ||| || || || || |||||| | | ||||| | ||| ||| |||| | Sbjct 66853 TTTATCTTGGATCTTGGC--CTTCACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGG 66796 Query 16895 GTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||||||| || || ||||| || || || ||||||||||||||| Sbjct 66795 GTGATGGTCTTGCCAGTCAGTGTCTTCACGAAAATCTGCATTTTG 66751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405030784991110