Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq56 118 9e-22
seq101 105 5e-18
seq292 93.3 3e-14
seq1820 82.4 6e-11
>seq56
Length=5723395
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||||||||||||||| || ||||||||||| | || ||| | ||
Sbjct 4239627 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239686
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| ||||| |||||| | || |||| ||| ||||| || | ||||||||||||
Sbjct 4239687 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239746
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | ||| || | | | ||||| | ||||||| |||| |||||||||
Sbjct 4239747 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239806
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| ||||||| || || || || |||||||||
Sbjct 4239807 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||||||||||||||| || ||||||||||| | || ||| | ||
Sbjct 4239399 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4239458
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| ||||| |||||| | || |||| ||| ||||| || | ||||||||||||
Sbjct 4239459 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239518
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | ||| || | | | ||||| | ||||||| |||| |||||||||
Sbjct 4239519 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239578
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||||| || || || || ||||||||
Sbjct 4239579 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| ||||||||||| || || |||||||| | || ||| | ||
Sbjct 4239171 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCT 4239230
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| ||||| |||||| | || |||| ||| ||||| || | ||||||||||||
Sbjct 4239231 TCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 4239290
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | ||| || | | | ||||| | ||||||| |||| |||||||||
Sbjct 4239291 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4239350
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||||| || || || || ||||||||
Sbjct 4239351 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| ||||||||||| || ||||||||||| | || ||| | || |||| |||
Sbjct 4238952 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 4239011
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || ||| | || |||| ||| ||||| || | ||||||||| || || | |
Sbjct 4239012 TTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGGATCTTC 4239071
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
|| || | | | ||||| | ||||||| |||| ||||||||| || ||||||
Sbjct 4239072 CCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 4239131
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
| || || || || ||||||||
Sbjct 4239132 AAGGTCTTCACGAAGATCTGCAT 4239154
>seq101
Length=4626942
Score = 105 bits (116), Expect = 5e-18
Identities = 156/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| |||||| |||||||| || || |||||||| || | | || | | ||
Sbjct 1982994 CAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1983053
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| ||| ||||||||| ||| ||||| || | |||||| || ||
Sbjct 1983054 TTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1983113
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | ||| ||| |||| |||||||
Sbjct 1983114 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATG 1983171
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || ||||| || || || || ||||||||||||
Sbjct 1983172 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1983210
>seq292
Length=3256830
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || || ||||| || | || || | | ||
Sbjct 1957756 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCT 1957815
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| |||| || ||||| ||||| || | |||||| || ||
Sbjct 1957816 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCT 1957875
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | ||||| | |||||| || | ||||||||
Sbjct 1957876 TGGATTTTGGCT--TTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGG 1957933
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || ||||| ||||||||
Sbjct 1957934 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
>seq1820
Length=90317
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/225 (69%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 16719 GCCTCAG--TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTT 16776
||||||| ||||| || || || ||||| || || | |||||| || | | ||
Sbjct 66973 GCCTCAGAGTACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCG 66914
Query 16777 GGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTC 16836
| | || |||| || ||||| ||| | ||||||| ||| ||||| | | || |||
Sbjct 66913 GCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTC 66854
Query 16837 TTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACG 16894
||| || || || || |||||| | | ||||| | ||| ||| |||| |
Sbjct 66853 TTTATCTTGGATCTTGGC--CTTCACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGG 66796
Query 16895 GTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||||||| || || ||||| || || || |||||||||||||||
Sbjct 66795 GTGATGGTCTTGCCAGTCAGTGTCTTCACGAAAATCTGCATTTTG 66751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405030784991110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |