Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1140 122 6e-23
seq167 122 6e-23
seq694 118 7e-22
seq1137 109 4e-19
seq517 109 4e-19
seq695 107 1e-18
seq101 105 4e-18
seq228 104 2e-17
seq26 100 2e-16
seq292 82.4 5e-11
>seq1140
Length=374558
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || |||||| |
Sbjct 117090 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCCT 117149
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 117150 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 117184
>seq167
Length=3366568
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 2542040 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGAAGGTGGGAATCTCGT 2542099
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||||| |||||||||||||||||||
Sbjct 2542100 TCATCCATTCATGCGTGTCACTAATTAGATGACGA 2542134
>seq694
Length=814564
Score = 118 bits (130), Expect = 7e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| || ||||||||| ||||| ||||||||| |||| | ||
Sbjct 212167 CAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 212226
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| ||||| | || ||||| | || | ||||| || ||
Sbjct 212227 TTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 212286
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| ||| || ||| ||||| | | ||||| |||||| || | || || ||
Sbjct 212287 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 212346
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| ||||| | |||||||||||| ||||||||
Sbjct 212347 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 212379
>seq1137
Length=333159
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
||||||||||||||||||||||||| ||| |||||||| ||| | || ||||||||
Sbjct 233658 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGAACAGTGGGAATCTCGT 233717
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| || |||||||||||| ||||||||||||
Sbjct 233718 TCATCCATTTATGCGCGTCACTGATTAGATGACGA 233752
>seq517
Length=1171097
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| ||||||||||| ||||| | ||||||| |||| | ||
Sbjct 1142626 CAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACGTCCATC 1142567
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 1142566 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1142507
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| ||| || ||| ||||| | | ||||| |||||| || | || || ||
Sbjct 1142506 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 1142447
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| ||||| | |||||||||||| ||||||||
Sbjct 1142446 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1142414
>seq695
Length=815165
Score = 107 bits (118), Expect = 1e-18
Identities = 153/214 (71%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 16896 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 16837
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | | | || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 16836 TTCCAGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 16777
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| ||| || ||| ||||| | | ||||| |||||| || | || || ||
Sbjct 16776 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 16717
Query 38285 TTTACCCGTCAAGGTTTTC-ACGAATATCTGCAT 38317
|| ||||| | ||||||| ||||| ||||||||
Sbjct 16716 CTTCCCCGTTAGGGTTTTCAACGAAAATCTGCAT 16683
>seq101
Length=4626942
Score = 105 bits (116), Expect = 4e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||| |||| |||| ||| || ||| ||| ||||| || |||||||||||
Sbjct 1982752 CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAA 1982811
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || |||||||| || || | || || || | ||||
Sbjct 1982812 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982871
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || || ||| || || ||||||||| | || || || | ||| |||
Sbjct 1982872 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACT 1982931
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||| ||| |||||||| |||||||||
Sbjct 1982932 TCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982979
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| |||| |||| ||| |||||| ||| || || || |||||||||||
Sbjct 1982524 CCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 1982583
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || |||||||| || || | || || || | ||||
Sbjct 1982584 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982643
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || || ||| || || ||||||||| | || || || | ||| |||
Sbjct 1982644 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACT 1982703
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||| ||| |||||||| |||||||||
Sbjct 1982704 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982751
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| ||| | |||| || ||||| ||| || || || |||||||||||
Sbjct 1982296 CCACCCCTCAGACGAAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1982355
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || || ||||| || || | || || || | ||||
Sbjct 1982356 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982415
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || || || || || ||||||||| | || ||||| | || |||
Sbjct 1982416 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCTACT 1982475
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||| || || || || || |||| ||| |||||||| |||||||||
Sbjct 1982476 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1982523
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| |||| |||| ||| || ||| ||| || || || |||||||||||
Sbjct 1982980 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1983039
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || |||||||| || || | || || || | ||||
Sbjct 1983040 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1983099
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || || || || || ||||||||| | || || || | ||| ||
Sbjct 1983100 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACC 1983159
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||| ||| |||||||| |||||||| ||
Sbjct 1983160 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1983209
>seq228
Length=2737486
Score = 104 bits (114), Expect = 2e-17
Identities = 78/92 (85%), Gaps = 5/92 (5%)
Strand=Plus/Minus
Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959
|||||||||||||||||||||| ||| ||| |||| |||| || ||||||||| |
Sbjct 10152 CCCGTTCCCTTGGCTGTGGTTTTGCTGGATGGTAGGCAGGGACAGTGGGAATCTCGTTCA 10093
Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||| |||||||| |||||||||||||||||||
Sbjct 10092 TCCATTCATGCGTGTCACTAATTAGATGACGA 10061
>seq26
Length=7528108
Score = 100 bits (110), Expect = 2e-16
Identities = 152/216 (70%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACA---CGTTC 38161
|||||| | ||||||||| |||||||||||| ||||| ||||||||| | | | |
Sbjct 6810801 CAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGTACATCC 6810742
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | ||| || || ||||| || || | || ||||||| || | ||||| ||
Sbjct 6810741 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTT 6810682
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| ||| || ||| ||||| | | ||||| |||||| | | || ||
Sbjct 6810681 ATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGAT 6810622
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| | |||||||| ||||||||||||
Sbjct 6810621 GGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCAT 6810586
>seq292
Length=3256830
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167
|||||| || || ||| ||| || || |||||||||||||||| | || | || ||
Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817
Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227
| ||||| || ||||| || || || || || |||| ||||| ||| || || ||
Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877
Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287
||||| || || |||| | || || | || || || | || || || ||
Sbjct 1957878 GATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 1957937
Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| ||| ||||| || ||||||||
Sbjct 1957938 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334899891743459
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