Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq61 183 4e-41 seq86 131 2e-25 seq54 123 3e-23 seq64 102 1e-16 >seq61 Length=5536230 Score = 183 bits (202), Expect = 4e-41 Identities = 405/603 (67%), Gaps = 11/603 (2%) Strand=Plus/Minus Query 32645 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 32704 |||||| ||||||| ||| || || || ||| ||| |||||| |||| |||| ||| Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334 Query 32705 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 |||||| |||||| || ||||| |||| | | | ||||| ||||| || || | Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274 Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 32824 || |||| |||| |||||||| | || |||||||| | || | || ||||| | Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214 Query 32825 GGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 || |||| ||||| |||||||| |||| ||| ||| | |||||||| Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 |||| || | | ||||| | | || | || |||||||| | | || || || Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 | ||||||||||||||| ||||| ||||||| ||||| |||| || || | || || Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 | ||| || ||||||| |||| | | | |||| | | |||||||| ||||| Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977 Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTCTGG 33118 || || | ||| ||||| || |||| || || | |||||||| |||| || || Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917 Query 33119 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 | || | ||| | | || || || || | | |||| || || |||||| ||| Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859 Query 33179 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 || ||||| || || ||| |||| | ||| | ||||| || | || | || || || Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799 Query 33239 AAA 33241 ||| Sbjct 435798 AAA 435796 >seq86 Length=5199016 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 122733 CTGTTTCTTATACCATA 122749 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || | ||||| || || || || || || | Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | || ||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 127173 GTTTATTTGA 127182 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 131666 AGGCTCCAGGTAAATAGC 131683 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/182 (71%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 63797 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 ||||||| |||| | || || | ||| |||||||||||||| | || || ||||| Sbjct 144132 TCCTCCAGACTCAC--CGCTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 144189 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913 || || || || || |||||||| || || || | || || | || || || | || Sbjct 144190 ATCCTTGCTGCCAGGATGGCATAGTCAGGGTGCTTAGTTGTCAAGGTCGCAGCCGTCTCA 144249 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973 || |||| ||| |||| ||| || || || || ||| | |||| || ||||| || ||| Sbjct 144250 GCAGCCAAAGTATCCAGTTCCACAGTGGTAACCCCACTGTATAAGCCCTGGATTACTTTC 144309 Query 63974 AT 63975 || Sbjct 144310 AT 144311 >seq54 Length=5886867 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| |||||||||||||| || ||||| |||||||| || | Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || || |||| Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062 Query 32803 C 32803 | Sbjct 1575063 C 1575063 >seq64 Length=5459255 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| ||||||||||||||||| ||||| || || | || || Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633540210484400