Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq61 183 4e-41
seq86 131 2e-25
seq54 123 3e-23
seq64 102 1e-16
>seq61
Length=5536230
Score = 183 bits (202), Expect = 4e-41
Identities = 405/603 (67%), Gaps = 11/603 (2%)
Strand=Plus/Minus
Query 32645 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 32704
|||||| ||||||| ||| || || || ||| ||| |||||| |||| |||| |||
Sbjct 436393 ATGTTTGAACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTC 436334
Query 32705 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764
|||||| |||||| || ||||| |||| | | | ||||| ||||| || || |
Sbjct 436333 ACTGGAAACCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGA 436274
Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 32824
|| |||| |||| |||||||| | || |||||||| | || | || ||||| |
Sbjct 436273 AGAACCAGCAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGC 436214
Query 32825 GGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881
|| |||| ||||| |||||||| |||| ||| ||| | ||||||||
Sbjct 436213 AGCTTCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCAT 436154
Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941
|||| || | | ||||| | | || | || |||||||| | | || || ||
Sbjct 436153 CGTCTGGATGGTGCTGAAGAGTAATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGAT 436094
Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001
| ||||||||||||||| ||||| ||||||| ||||| |||| || || | || ||
Sbjct 436093 GAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACA 436034
Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061
| ||| || ||||||| |||| | | | |||| | | |||||||| |||||
Sbjct 436033 GCGAGCTTCTCTAATCTGAACTTGGCTCC---ACTGTTCCACCCAGTTTTCATTTACTAT 435977
Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATG---TTTTATAAAATATTTTTCGTCTGG 33118
|| || | ||| ||||| || |||| || || | |||||||| |||| || ||
Sbjct 435976 ACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAGG 435917
Query 33119 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178
| || | ||| | | || || || || | | |||| || || |||||| |||
Sbjct 435916 CTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAA 435859
Query 33179 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238
|| ||||| || || ||| |||| | ||| | ||||| || | || | || || ||
Sbjct 435858 GGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGAC 435799
Query 33239 AAA 33241
|||
Sbjct 435798 AAA 435796
>seq86
Length=5199016
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 122613 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 122672
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 122673 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 122732
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 122733 CTGTTTCTTATACCATA 122749
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489
|||| || || ||||| || | || || || | ||||| || || || || || || |
Sbjct 126993 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCTCCAT 127052
Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549
||||||||||||| ||||||| |||||| || || ||||| | || ||||| ||||
Sbjct 127053 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 127112
Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609
| | | || ||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 127113 ACCTCATCAGTATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 127172
Query 62610 TCTTATTAGA 62619
||||| ||
Sbjct 127173 GTTTATTTGA 127182
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 131546 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 131605
Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 131606 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 131665
Query 63187 CGGTTCCAAGTATATGGC 63204
|| |||| ||| || ||
Sbjct 131666 AGGCTCCAGGTAAATAGC 131683
Score = 86.0 bits (94), Expect = 8e-12
Identities = 129/182 (71%), Gaps = 5/182 (3%)
Strand=Plus/Plus
Query 63797 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853
||||||| |||| | || || | ||| |||||||||||||| | || || |||||
Sbjct 144132 TCCTCCAGACTCAC--CGCTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 144189
Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913
|| || || || || |||||||| || || || | || || | || || || | ||
Sbjct 144190 ATCCTTGCTGCCAGGATGGCATAGTCAGGGTGCTTAGTTGTCAAGGTCGCAGCCGTCTCA 144249
Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973
|| |||| ||| |||| ||| || || || || ||| | |||| || ||||| || |||
Sbjct 144250 GCAGCCAAAGTATCCAGTTCCACAGTGGTAACCCCACTGTATAAGCCCTGGATTACTTTC 144309
Query 63974 AT 63975
||
Sbjct 144310 AT 144311
>seq54
Length=5886867
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| || || | ||| |||||||||||||| || ||||| |||||||| || |
Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| |||||||| || ||||||||||| |||||||| || || || ||||
Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062
Query 32803 C 32803
|
Sbjct 1575063 C 1575063
>seq64
Length=5459255
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| ||||| || || | ||| ||||||||||||||||| ||||| || || | || ||
Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803
||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| ||
Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 1613453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633540210484400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |