Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq56 127 2e-24
seq292 120 3e-22
seq101 116 3e-21
seq376 95.1 1e-14
seq1820 89.7 4e-13
>seq56
Length=5723395
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || || ||||| ||||||||||| ||||||| | || |||||| |
Sbjct 4239841 ACAATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 4239782
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| |||||| | ||| || ||| |||||||| || || || ||||||
Sbjct 4239781 AGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGAC 4239722
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || ||||| || ||||| | ||||||| ||||| || || |||
Sbjct 4239721 CAGCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 4239662
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || |||||||| || | ||||| | || ||||| ||
Sbjct 4239661 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTCAGAGGGGG 4239612
>seq292
Length=3256830
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || ||||||| |||| || ||| | |
Sbjct 1957967 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1957908
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || ||| | | |||| |||| || || || || || || || || |||||
Sbjct 1957907 GACACCATTGAGAACGTTAAAGCCAAAATCCAA-GATAAGGAGGGCATCCCCCCCGACCA 1957849
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | |||||||| |||||||| | ||||||| |||||| || ||||||||
Sbjct 1957848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACAA 1957789
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || ||||| ||||| || || || |||||
Sbjct 1957788 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCT 1957756
>seq101
Length=4626942
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| | |||||||| | |
Sbjct 1982750 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 1982691
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || ||| || || || || || || ||||||||
Sbjct 1982690 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982631
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || |||||||||||||||| || | ||||||| |||||| | ||||||||
Sbjct 1982630 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982571
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| ||||| || ||| | || ||
Sbjct 1982570 ATCCAGAAAGAGTCCACTCTGCATCTGGTCCT 1982539
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || |||| || | |||||||| |
Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || ||| || || || || || || ||||||||
Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || |||||||||||||||| || | ||||||| |||||| | ||||||||
Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| |||||||| ||||| || ||| | || || | || ||||| ||
Sbjct 1982798 ATCCAAAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGAGGTGG 1982752
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| |||| || || ||||||| | || ||||| |
Sbjct 1983207 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 1983148
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| ||||| ||||| || ||| || || || || || || ||||||||
Sbjct 1983147 TGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCA 1983088
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||||||||||||||| || | ||||||| |||||| | ||||||||
Sbjct 1983087 GCAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1983028
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| ||||| || ||| | || ||
Sbjct 1983027 CATCCAGAAAGAGTCCACCCTGCATCTGGTCCT 1982995
>seq376
Length=1707047
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||| || || ||||||| |||| | || |
Sbjct 762524 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCGAGGCCAAGCCCAGC 762583
Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || ||| ||| |||| |||| || ||||| || || || |||||
Sbjct 762584 GACACCATTGAGAACGTCA---AAGCTAAAA-TCCGAGACAACGAGGGCATCTTTCCTGA 762639
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||||||| | | |||||| ||||||| ||||| ||| | |||| || |||||
Sbjct 762640 CCAACAGCGTCTGACCTTTGCCAGCAAACAGCTAGAACATGGCCACACTCTGTTAGATTA 762699
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||| ||||| ||||| || || || |||||
Sbjct 762700 CAATATTCAGAAAGAGTCCACCCTGCACTTGGTGCT 762735
>seq1820
Length=90317
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| |||| || || ||||||| | || ||||| |
Sbjct 66754 AATGCAGATTTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 66813
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| ||||| | ||||| || ||| || ||||| | || | || |||||
Sbjct 66814 TGACACAATCGAAACTGTGAAGGCCAAGATCCAAGATAAAGAGTGCATCCGCCCCGACCA 66873
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||| ||||||||||| || | ||||||| |||||| | ||||||||
Sbjct 66874 GCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 66933
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
| || ||||| || || || ||
Sbjct 66934 CCTCCAGAAAGAGTCGACTCTCCA 66957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433266796347035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |