Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq56 127 2e-24 seq292 120 3e-22 seq101 116 3e-21 seq376 95.1 1e-14 seq1820 89.7 4e-13 >seq56 Length=5723395 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||| ||||||||||| ||||||| | || |||||| | Sbjct 4239841 ACAATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 4239782 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| |||||| | ||| || ||| |||||||| || || || |||||| Sbjct 4239781 AGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGAC 4239722 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || ||||| | ||||||| ||||| || || ||| Sbjct 4239721 CAGCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 4239662 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || |||||||| || | ||||| | || ||||| || Sbjct 4239661 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTCAGAGGGGG 4239612 >seq292 Length=3256830 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| |||| || ||| | | Sbjct 1957967 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1957908 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | | |||| |||| || || || || || || || || ||||| Sbjct 1957907 GACACCATTGAGAACGTTAAAGCCAAAATCCAA-GATAAGGAGGGCATCCCCCCCGACCA 1957849 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| |||||||| | ||||||| |||||| || |||||||| Sbjct 1957848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACAA 1957789 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| ||||| || || || ||||| Sbjct 1957788 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCT 1957756 >seq101 Length=4626942 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | |||||||| | | Sbjct 1982750 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 1982691 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || || || || || |||||||| Sbjct 1982690 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982631 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||||||||||||||| || | ||||||| |||||| | |||||||| Sbjct 1982630 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982571 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || ||| | || || Sbjct 1982570 ATCCAGAAAGAGTCCACTCTGCATCTGGTCCT 1982539 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || |||| || | |||||||| | Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || || || || || |||||||| Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||||||||||||||| || | ||||||| |||||| | |||||||| Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| ||||| || ||| | || || | || ||||| || Sbjct 1982798 ATCCAAAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGAGGTGG 1982752 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || ||||||| | || ||||| | Sbjct 1983207 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 1983148 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| ||||| || ||| || || || || || || |||||||| Sbjct 1983147 TGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCA 1983088 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||||||||||||||| || | ||||||| |||||| | |||||||| Sbjct 1983087 GCAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1983028 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || ||| | || || Sbjct 1983027 CATCCAGAAAGAGTCCACCCTGCATCTGGTCCT 1982995 >seq376 Length=1707047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||| || || ||||||| |||| | || | Sbjct 762524 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCGAGGCCAAGCCCAGC 762583 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| ||| |||| |||| || ||||| || || || ||||| Sbjct 762584 GACACCATTGAGAACGTCA---AAGCTAAAA-TCCGAGACAACGAGGGCATCTTTCCTGA 762639 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | | |||||| ||||||| ||||| ||| | |||| || ||||| Sbjct 762640 CCAACAGCGTCTGACCTTTGCCAGCAAACAGCTAGAACATGGCCACACTCTGTTAGATTA 762699 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| ||||| ||||| || || || ||||| Sbjct 762700 CAATATTCAGAAAGAGTCCACCCTGCACTTGGTGCT 762735 >seq1820 Length=90317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || ||||||| | || ||||| | Sbjct 66754 AATGCAGATTTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAG 66813 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||||| || ||| || ||||| | || | || ||||| Sbjct 66814 TGACACAATCGAAACTGTGAAGGCCAAGATCCAAGATAAAGAGTGCATCCGCCCCGACCA 66873 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 66874 GCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 66933 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 | || ||||| || || || || Sbjct 66934 CCTCCAGAAAGAGTCGACTCTCCA 66957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433266796347035