Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq54 98.7 1e-15 >seq54 Length=5886867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| |||||||| ||| Sbjct 1574963 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATATTGACGCA 1575022 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG 93247 ||| ||||||||| || || ||||||||||| || || ||||||| |||||| Sbjct 1575023 AAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCCACAACCCGTTCG 1575076 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||| || ||||||| || ||||| Sbjct 1577389 GAATCTTTAATGTAAGTGTCAATGAGGAGACTGTACATCTCTGAATGGATGTTTTCCATG 1577448 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct 1577449 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTG 1577498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556780131752360