Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq101 118 9e-22 seq694 107 2e-18 seq695 100 2e-16 seq1820 82.4 6e-11 seq63 82.4 6e-11 >seq101 Length=4626942 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || || ||||||||| ||| | Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || |||||||| |||||| | ||| | || |||| Sbjct 1982798 ATCCAAAAAGAGTCCACCCTGCATCTGGTCCTGCG 1982764 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | || || || || |||| || || |||||| Sbjct 1983212 GTCAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAA 1983153 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || ||||| |||||||| || || || Sbjct 1983152 CCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCT 1983093 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | ||||| ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 1983092 GACCAGCAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 1983033 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| || ||||| |||||| | ||| | || |||| Sbjct 1983032 TACAACATCCAGAAAGAGTCCACCCTGCATCTGGTCCTGCG 1982992 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || ||||||||| ||| Sbjct 1982750 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 1982691 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 1982690 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982631 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1982630 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982571 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| ||||| | ||| | || |||| Sbjct 1982570 ATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCG 1982536 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || ||||| || ||| Sbjct 1982522 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1982463 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||| |||||||| || || || || || Sbjct 1982462 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAG 1982403 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 1982402 CAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982343 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 1982342 ATCCAGAAAGAGTCGAC 1982326 >seq694 Length=814564 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || ||||| |||| || || || |||||||||| || ||| || | Sbjct 212380 GATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTTGAGGTTGAACCCTC 212321 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || || ||||| || ||||| || ||||| || ||||| Sbjct 212320 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 212261 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| || | || ||| || || | || || ||||| Sbjct 212260 GCAGAGACTAATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 212201 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| | ||||| | ||| | || ||| || | || || ||| Sbjct 212200 CATTCAAAAGTAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGGT 212152 >seq695 Length=815165 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTT-AAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||| ||||| ||| ||||| |||| || || || ||||||| || || ||| || Sbjct 16682 GATGCAGATTTTCGTTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCT 16741 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | || || | || || ||||| || ||||| || ||||| || |||| Sbjct 16742 CGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATC 16801 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || ||||| ||||| | | || ||| || || | || || |||| Sbjct 16802 AGCAGAGACTGATCTTTGCTGGCAAGCCACTGGAAGATGGACGTACTTTGTCTGACTACA 16861 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||| || ||||| | ||| | || ||| || | || || ||| Sbjct 16862 ACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGGT 16911 >seq1820 Length=90317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| ||||| || || || | || || || || |||| || || |||||| Sbjct 66749 GTCAAAATGCAGATTTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAA 66808 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || || | || | | || || || ||||| || ||| | || | ||| Sbjct 66809 CCCAGTGACACAATCGAAACTGTGAAGGCCAAGATCCAAGATAAAGAGTGCATCCGCCCC 66868 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | ||||| ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 66869 GACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 66928 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||| | || ||||| || || Sbjct 66929 TACAACCTCCAGAAAGAGTCGAC 66951 >seq63 Length=7304539 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 || |||| |||||||| | || || | || || || |||| ||||| ||| | ||| Sbjct 4206377 AGTTGCAGATTTTTGTGGAGACCCTAGCTGGCAAGACCATCACCCTTGAGGTG-ACCCCA 4206435 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | | | || | |||||| ||||| |||||||||||||| || || || | Sbjct 4206436 GTGGCATCACTGAGAAGATCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGCCT 4206495 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| || ||||| ||||||| | |||||| || ||||| || || || |||| Sbjct 4206496 AGCAGCGTCGGATTTTTGCGGGCAAACCGCCAGAGGA-CAGCGCACTGTGTCAGACTACA 4206554 Query 22397 ACATTCAAAAAGAATCCAC 22415 | | || ||||| ||||| Sbjct 4206555 ATAGCCAGAAAGAGTCCAC 4206573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419668717223785