Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq221 95.1 2e-14
seq81 91.5 3e-13
seq1270 89.7 1e-12
seq884 89.7 1e-12
seq176 89.7 1e-12
>seq221
Length=2804169
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct 2466707 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 2466648
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 2466647 TCCCGGCAGAGA 2466636
>seq81
Length=4962868
Score = 91.5 bits (100), Expect = 3e-13
Identities = 78/95 (82%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 142482 ATCGAAACCGGGTGGTGAGA-TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTA 142540
||| | || ||||| ||| | |||||| |||||||||||||||||| |||||||||
Sbjct 2458721 ATCTAGACAGGGTGCCGAGGGTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTA 2458662
Query 142541 ATCTAGTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575
|||| ||||||||||||||||||||| | ||||
Sbjct 2458661 ATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGC 2458627
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2478954 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2478895
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 2478894 CCCACGTCGGGC 2478883
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2486728 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2486787
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 2486788 CCCACGTTGGGC 2486799
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2482314 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2482373
Query 142564 CCCAC 142568
|||||
Sbjct 2482374 CCCAC 2482378
Score = 84.2 bits (92), Expect = 4e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564
||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 2467129 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAGCC 2467070
Query 142565 CCACATCGGGC 142575
|||| | ||||
Sbjct 2467069 CCACGTTGGGC 2467059
>seq1270
Length=262058
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 188969 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 189028
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 189029 CCCACGTTGGGC 189040
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 198874 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 198815
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 198814 CCCACGTTGGGC 198803
>seq884
Length=557698
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 83422 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 83363
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 83362 CCCACGTTGGGC 83351
>seq176
Length=3230073
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 381823 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 381764
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 381763 CCCACGTTGGGC 381752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027684182616349
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |