Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq101 176 8e-39 seq56 170 4e-37 seq292 152 9e-32 seq26 127 4e-24 seq9 114 2e-20 seq376 113 8e-20 seq887 98.7 2e-15 >seq101 Length=4626942 Score = 176 bits (194), Expect = 8e-39 Identities = 172/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| || || |||||||||||||||||||| ||||| || || || | Sbjct 1982761 AGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGG 1982820 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || ||||| || || ||||| ||| Sbjct 1982821 CCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1982880 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||||||||||| ||| | ||| ||||||| ||| Sbjct 1982881 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTC-GCTGGGTTCCACTTCCAGGGT 1982939 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 1982940 TATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978 Score = 176 bits (194), Expect = 8e-39 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| || || ||||||||||| |||||||| ||||| || || || | Sbjct 1982989 AGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1983048 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || ||||| || || ||||| ||| Sbjct 1983049 CCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1983108 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||| || ||||||||||| | ||| || |||| |||| Sbjct 1983109 TTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACCTCCAGGGTG 1983168 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || || || |||||||| ||||| ||||||||| || Sbjct 1983169 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 1983210 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| || || ||||||||||| |||||||| ||||| || || || | Sbjct 1982533 AGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 1982592 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || ||||| || || ||||| ||| Sbjct 1982593 CCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1982652 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| || ||||||||||| | ||| ||||||| |||| Sbjct 1982653 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACTTCCAGGGTG 1982712 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 1982713 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982750 >seq56 Length=5723395 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| ||||||||||| || |||||||| || || || || || | | Sbjct 4239621 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4239680 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| ||||| || || || || || || ||||| || || ||||| || Sbjct 4239681 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4239740 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 4239741 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239800 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || | |||||| ||||| ||||||||| Sbjct 4239801 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| ||||||||||| || |||||||| || || || || || | | Sbjct 4239393 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 4239452 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| ||||| || || || || || || ||||| || || ||||| || Sbjct 4239453 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4239512 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 4239513 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239572 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 4239573 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || ||||| || || || || || || | | Sbjct 4239165 AGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGC 4239224 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| ||||| || || || || || || ||||| || || ||||| || Sbjct 4239225 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 4239284 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 4239285 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4239344 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 4239345 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382 Score = 150 bits (166), Expect = 3e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| || | ||| || |||||||| || |||||||| || || || || || | ||| Sbjct 4238939 GCGCAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 4238998 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | ||| ||||| || || || || || || ||||| || || ||||| || || Sbjct 4238999 ATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTT 4239058 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||||| ||||| | |||||| |||||||||||| | || || |||| |||||| Sbjct 4239059 TTCTTGGATCTTCCCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 4239118 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || | |||||| ||||| |||||||| Sbjct 4239119 GGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239154 >seq292 Length=3256830 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || ||||||||||| ||||| || ||||| || Sbjct 1957741 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 1957800 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || || | || |||||||| || Sbjct 1957801 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGG 1957860 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| ||||| || || || || ||| ||| |||||||| | || || Sbjct 1957861 ATGCCCTCCTTATCTTGGATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACC 1957920 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 1957921 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq26 Length=7528108 Score = 127 bits (140), Expect = 4e-24 Identities = 170/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||| ||||| ||||| || || || Sbjct 6810815 CCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 6810756 Query 68295 A--GT-GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 | || || | |||||||| | ||||| || || || || || || || || ||||| Sbjct 6810755 AAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 6810696 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| |||||||| || |||||||| ||||| || || || || || | | ||| Sbjct 6810695 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCA 6810636 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | | |||||||| || ||||| ||||| || | ||||||||||||| || Sbjct 6810635 ACCTTGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATTCTG 6810582 >seq9 Length=9398461 Score = 114 bits (126), Expect = 2e-20 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTT 68310 |||| ||| | || |||||||| |||| | | | ||| || |||||| || | ||| Sbjct 525098 ACCAGGTGGGGAGTCGACTCTTTCTGGAAGCTGTGATCAGAAAGAGTGTGGTCAC--CTT 525155 Query 68311 CTAACTGCTTCCC-GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 | | |||||| || || | | ||||| || |||||||| | || |||| || || ||| Sbjct 525156 CCAGCTGCTTGCCTGGTGGAAATGAGCCTCTGTTGGTCAGCGGGGCTGCCCTCTTTATCT 525215 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| ||||| || ||||||||||| | || || |||| ||||||||| Sbjct 525216 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 525275 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || || |||||||| ||||| |||||||| || Sbjct 525276 TTGCCGGTCAGGGTCTTCACGAAGCTCTGCATTTTG 525311 >seq376 Length=1707047 Score = 113 bits (124), Expect = 8e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||||||| || ||||||||||| || || || ||||| | || || Sbjct 762741 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAACAGAGTGTGG 762682 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||| ||||| ||| || | ||| || | || | |||||||| || ||||| || Sbjct 762681 CCATGTTCTAGCTGTTTGCTGGCAAAGGTCAGACGCTGTTGGTCAGGAAAGATGCCCTCG 762622 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 |||||| | || || || |||||| ||| |||||||| ||| | | | || | ||| Sbjct 762621 TTGTCTCGGATTTTAGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTTGGCCTCGAGGGT 762563 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||| | |||||||| || || |||||||| Sbjct 762562 GATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 762524 >seq887 Length=554748 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || ||||||||||| |||||||| || || ||||||| | ||||| || Sbjct 107251 ACCACATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTG--CAGCCATCCTCC 107308 Query 68313 AACTGCTTCCCGGCGAATATGAG-TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| || || || | || || | | | ||| ||||| ||||| || |||||||| Sbjct 107309 AGCTGTTTGCCTGCAAGAATCAGATGGAGGCTAGTCAGGTGGGATGCCCTCTTTGTCTTG 107368 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTT 68430 || || || ||||| |||| |||||| |||| | || | || | | ||||||| | Sbjct 107369 GATTTTGGCTTTGACATCCTCATTGGTGT-TGCTGGGCTCAGCCTCAAGGATGATGGTCT 107427 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGC 68459 | ||| | |||||||| || || |||||| Sbjct 107428 TGCCC-TCAGGGTCTTCACAAAGATCTGC 107455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921488891475080