Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq292 131 4e-25
seq101 127 5e-24
seq26 109 1e-18
seq108 107 5e-18
seq174 93.3 1e-13
seq376 91.5 3e-13
>seq292
Length=3256830
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | || | ||| ||||| |||||||| || || |
Sbjct 1957741 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 1957800
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | ||||| || || || ||||||||||| || |||
Sbjct 1957801 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGG 1957860
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| |||||||| ||||| ||||| || || | || || | || ||
Sbjct 1957861 ATGCCCTCCTTATCTTGGATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACC 1957920
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || ||||| ||||| || || ||||||||
Sbjct 1957921 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967
>seq101
Length=4626942
Score = 127 bits (140), Expect = 5e-24
Identities = 168/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || ||||| | ||| ||||||||||| || || |
Sbjct 1982748 CATG-CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAAT 1982806
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || || || || || || || | ||| || |
Sbjct 1982807 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAG 1982866
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || ||||||||||| || || ||||| ||||| || | ||||| | ||
Sbjct 1982867 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTT 1982926
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||| || || || ||||| |||||||| ||||| ||||| ||||||||
Sbjct 1982927 CCACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978
Score = 122 bits (134), Expect = 2e-22
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| | || | || || ||||| | ||| ||||| ||||| || || |
Sbjct 1982520 CATG-CCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAAT 1982578
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| | || || || || || || || | ||| || |
Sbjct 1982579 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAG 1982638
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || ||||||||||| || || ||||| ||||| || | || || | ||
Sbjct 1982639 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTT 1982698
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 1982699 CCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982750
>seq26
Length=7528108
Score = 109 bits (120), Expect = 1e-18
Identities = 165/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || || |||| ||| || ||||| || || ||||| |
Sbjct 6810815 CCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 6810756
Query 288307 AGCGTG---CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || | ||| ||||| | ||| || || || |||||||| | ||| |||
Sbjct 6810755 AAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 6810696
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| |||||||| || || || || || |||||||| | ||| | |||
Sbjct 6810695 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCA 6810636
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| | ||| ||||| |||||||| || || || || | ||||||||||||| ||
Sbjct 6810635 ACCTTGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATTCTG 6810582
>seq108
Length=4373546
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| ||| || ||||| || | |||||
Sbjct 1070436 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCAC 1070495
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| ||| | | ||| || || || ||||||| | ||| ||| | ||
Sbjct 1070496 AGAGTTCGTCCATCTGCCAGTTGCTTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGA 1070555
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || |||||||||| ||| ||||| |
Sbjct 1070556 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTACTCTATCTGAGGATTCAGCC 1070615
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| |||||||| || || || || || || ||||||||
Sbjct 1070616 TCAAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 1070662
>seq174
Length=3244187
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTT 288394
|||| ||||| || | ||| ||| | ||||| ||||||||||||||| | || || |
Sbjct 1727039 CTGCAAAGATGAGCCTCTGCTGACCAGG-GGGATGCCTTCTTTATCCTGGGTCTTGGCCT 1727097
Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454
|||| || || || | ||| || | ||| || || |||||||| ||||| | |||||| |
Sbjct 1727098 TCACATTCTCCATGGTATCACTTGGTTCCACCTCCAGCGTGATGGTCTTGCAGGTCAGGG 1727157
Query 288455 TCTTGACGAATATCTGCATTATG 288477
|||| | ||| ||||||| ||
Sbjct 1727158 TCTTCATGAAGGCCTGCATTTTG 1727180
>seq376
Length=1707047
Score = 91.5 bits (100), Expect = 3e-13
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| |||| | ||| || | || | ||| ||||| || ||||| || ||
Sbjct 762750 CCACCCAGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAAC 762691
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365
|| ||| | || | ||||| ||||| | || ||| ||||||||||||| || ||
Sbjct 762690 AGAGTGTGGCCATGTTCTAGCTGTTTGCTGGCAAAGGTCAGACGCTGTTG---GTCAGGA 762634
Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||| || || || || ||||||| ||||| ||||| || || | ||||| | |
Sbjct 762633 AAGATGCCCTCGTTGTCTCGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTTG 762574
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||| ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 762573 GCCTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 762524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179479240122342
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |