Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq292 131 4e-25 seq101 127 5e-24 seq26 109 1e-18 seq108 107 5e-18 seq174 93.3 1e-13 seq376 91.5 3e-13 >seq292 Length=3256830 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | ||| ||||| |||||||| || || | Sbjct 1957741 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 1957800 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| || || || ||||||||||| || ||| Sbjct 1957801 AGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGG 1957860 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| |||||||| ||||| ||||| || || | || || | || || Sbjct 1957861 ATGCCCTCCTTATCTTGGATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACC 1957920 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 1957921 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq101 Length=4626942 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| ||||||||||| || || | Sbjct 1982748 CATG-CCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAAT 1982806 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || || || || | ||| || | Sbjct 1982807 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAG 1982866 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || ||||| ||||| || | ||||| | || Sbjct 1982867 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTT 1982926 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 1982927 CCACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| ||||| ||||| || || | Sbjct 1982520 CATG-CCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAAT 1982578 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || || || || | ||| || | Sbjct 1982579 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAG 1982638 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || ||||| ||||| || | || || | || Sbjct 1982639 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTT 1982698 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 1982699 CCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982750 >seq26 Length=7528108 Score = 109 bits (120), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || || |||| ||| || ||||| || || ||||| | Sbjct 6810815 CCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 6810756 Query 288307 AGCGTG---CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || | ||| ||||| | ||| || || || |||||||| | ||| ||| Sbjct 6810755 AAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 6810696 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| |||||||| || || || || || |||||||| | ||| | ||| Sbjct 6810695 GGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCA 6810636 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | ||| ||||| |||||||| || || || || | ||||||||||||| || Sbjct 6810635 ACCTTGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATTCTG 6810582 >seq108 Length=4373546 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || | ||||| Sbjct 1070436 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCAC 1070495 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||| | | ||| || || || ||||||| | ||| ||| | || Sbjct 1070496 AGAGTTCGTCCATCTGCCAGTTGCTTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGA 1070555 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || |||||||||| ||| ||||| | Sbjct 1070556 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTACTCTATCTGAGGATTCAGCC 1070615 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| || || || || || || |||||||| Sbjct 1070616 TCAAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 1070662 >seq174 Length=3244187 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTT 288394 |||| ||||| || | ||| ||| | ||||| ||||||||||||||| | || || | Sbjct 1727039 CTGCAAAGATGAGCCTCTGCTGACCAGG-GGGATGCCTTCTTTATCCTGGGTCTTGGCCT 1727097 Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 |||| || || || | ||| || | ||| || || |||||||| ||||| | |||||| | Sbjct 1727098 TCACATTCTCCATGGTATCACTTGGTTCCACCTCCAGCGTGATGGTCTTGCAGGTCAGGG 1727157 Query 288455 TCTTGACGAATATCTGCATTATG 288477 |||| | ||| ||||||| || Sbjct 1727158 TCTTCATGAAGGCCTGCATTTTG 1727180 >seq376 Length=1707047 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||| | ||| || | || | ||| ||||| || ||||| || || Sbjct 762750 CCACCCAGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAAC 762691 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||| | || | ||||| ||||| | || ||| ||||||||||||| || || Sbjct 762690 AGAGTGTGGCCATGTTCTAGCTGTTTGCTGGCAAAGGTCAGACGCTGTTG---GTCAGGA 762634 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || || || || ||||||| ||||| ||||| || || | ||||| | | Sbjct 762633 AAGATGCCCTCGTTGTCTCGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTTG 762574 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 762573 GCCTCGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 762524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179479240122342