Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq292 131 2e-25 seq1641 95.1 1e-14 seq762 93.3 5e-14 seq150 93.3 5e-14 seq376 91.5 2e-13 seq56 91.5 2e-13 seq451 89.7 6e-13 seq26 89.7 6e-13 seq1820 87.8 2e-12 seq1316 82.4 8e-11 >seq292 Length=3256830 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || || ||||||||||||| |||||| || | || || Sbjct 1957758 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTC 1957817 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || || || || || ||||||||||||| || | || |||||| || Sbjct 1957818 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTG 1957877 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||| | || | | ||||| || | || || |||| |||||||| || Sbjct 1957878 GATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 1957937 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| |||||||| ||||| Sbjct 1957938 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq1641 Length=265544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 148933 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 148874 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 148873 CTATACTAACGAGGA 148859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 200996 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 201055 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 201056 TACTAACGAGGA 201067 >seq762 Length=1166646 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1143360 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 1143419 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 1143420 ACTATACTAACGAGGA 1143435 >seq150 Length=4781790 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1975149 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1975090 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1975089 TATACTAACGAGGA 1975076 >seq376 Length=1707047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || |||||||||||||| |||||| | | | || Sbjct 762733 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAACAGAGTGTGGCCATGTTC 762674 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||| || | || || | || ||||| ||||| | | || ||| ||||| Sbjct 762673 TAGCTGTTTGCTGGCAAAGGTCAGACGCTGTTGGTCAGGAAAGATGCCCTCGTTGTCTCG 762614 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | | |||||||| | | | |||| |||||||| || Sbjct 762613 GATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTTGGCCTCGAGGGTGATGGTCTT 762554 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | || ||||| |||||||| ||||| Sbjct 762553 GCCCATCAGGGTCTTCACAAAGATCTGCAT 762524 >seq56 Length=5723395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4249860 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4249919 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 4249920 TACTAACGAGGACTG 4249934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4252203 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4252262 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 4252263 TACTAACGAGGAT 4252275 >seq451 Length=1369147 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 230960 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 231019 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 231020 TACTAACGAGGA 231031 >seq26 Length=7528108 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4678968 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4678909 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4678908 TACTAACGAGGA 4678897 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6755983 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 6755924 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 6755923 ATACTAACGAGGA 6755911 >seq1820 Length=90317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || | |||||||||| ||||| || | || || |||||||| || || || Sbjct 66946 CTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 66887 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||||| | | || ||| || || ||| || || | || Sbjct 66886 GATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCTTGGATCTTGGCCTTCACAGT 66827 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | |||||| || | |||||||| ||||| || || ||||| || Sbjct 66826 TTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCAC 66767 Query 42197 AAAGATTTGCATTTTCAC 42214 || || |||||||| || Sbjct 66766 GAAAATCTGCATTTTGAC 66749 >seq1316 Length=240920 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| |||||||| |||||||||| | ||||||||||||| Sbjct 15841 CTCCCCGTCGGGGAATCGAACCCAGGTCTCCCACGTGACAGGCAGGGATACTCACCACTA 15900 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 15901 TACTAACGAGGACTG 15915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543134108835760