Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq863 159 5e-34
seq9 105 1e-17
>seq863
Length=591582
Score = 159 bits (176), Expect = 5e-34
Identities = 216/301 (72%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| || | || ||||| |||||||| || || ||||| |||||||| |
Sbjct 191080 AACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 191021
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | || ||||| || || || || ||||| || |||||||| |
Sbjct 191020 GGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 190961
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| || |||||| || |||| || ||||||||||| || || || |||| || |
Sbjct 190960 AGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTAC 190901
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
||| ||||||| ||||||||| | ||||| || ||||| || | || | ||| || ||
Sbjct 190900 CATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCAGGATATAG 190841
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | || || | || ||||| ||||| || ||| | ||||| || |||||||| ||
Sbjct 190840 CTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTCC 190781
Query 9175 T 9175
|
Sbjct 190780 T 190780
Score = 156 bits (172), Expect = 6e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || || | | |||| ||| |||| || ||||| || ||||| || ||||| || ||
Sbjct 189515 GTCTGGAATAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGCACATCACACACT 189456
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| ||||| | |||||| || |||||||||||||| | ||| ||||| || || ||
Sbjct 189455 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAACCCGAAG 189396
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
||||| | ||||| ||||| ||||| | || || || | ||| | || | ||| | |
Sbjct 189395 ACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACGTGGGGTGGGTAGATCATCTCC 189336
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
||||| || || ||||| ||||| ||||||| || || ||||| ||||
Sbjct 189335 ACCTGAGTATCCTTGACTGTGGGAGGATACACCTCCCCATCAATTACCT 189287
Score = 114 bits (126), Expect = 2e-20
Identities = 198/286 (69%), Gaps = 4/286 (1%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| ||||| || || |||| | || || | | | ||
Sbjct 190114 CCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGCCCATGTTCCAGCAATATA 190055
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| | || |||| | ||| |||| | || |||
Sbjct 190054 GAGTTGTTGTAGATAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 189995
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| || || ||||| || ||||| ||||| ||||||
Sbjct 189994 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCTATACGGTTTTGGTAC 189935
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | ||| |||||||| | |||| |||||| || || |
Sbjct 189934 TGGAACTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGCTTGAAGTGATAGCCAC 189877
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | ||||| ||||| | | || | ||| ||||||||||| ||
Sbjct 189876 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 189831
Score = 113 bits (124), Expect = 7e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || || |||||| || || || || |||| ||| |||
Sbjct 187877 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 187818
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| ||||| ||||| ||||| ||||||||||| || |||||||| || | ||||||
Sbjct 187817 TAGTAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACGTTGTAAGTT 187758
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | |||||||||
Sbjct 187757 GGTGGACTCTCAATCAAATGTGACCTGGCT 187728
>seq9
Length=9398461
Score = 105 bits (116), Expect = 1e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022
|| || || ||||| || || ||||||||| |||| ||||||||| ||| | | |||
Sbjct 7782060 TCACCACCAAAGGTACTCGGCTTCCAGTACTCCGGAGAGCAGATGGGATTCCCTAGGAGG 7782119
Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082
|| || | |||||| |||||||| | || || || ||||| || ||||||| |||
Sbjct 7782120 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCTCCAAAGATGGAGTTTGGA 7782179
Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142
| || || | | | ||| | ||||| || | || |||| ||| ||||| ||
Sbjct 7782180 TGGCACTTCTCCAGAAGCAGGCCTGGGTAGAACTCCAAGGCATCGATGTCTCCATACAGC 7782239
Query 9143 GCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
| ||||||||||| || |||||| |||| |||
Sbjct 7782240 TCCTCCAACTCGGCGGCAATCTCCGTCTCCCCT 7782272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723623158952600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |