Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq292 149 6e-31 seq56 145 8e-30 seq101 127 2e-24 seq376 89.7 5e-13 seq1935 84.2 2e-11 seq887 82.4 8e-11 >seq292 Length=3256830 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| |||| |||||| ||| Sbjct 1957967 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1957908 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||||| ||||||| || || ||||| || ||| ||||||| Sbjct 1957907 GACACCATTGAGAACG-TTAAAGCCAAAATCCAAGATAAGGAGGGCATCCCCCCCGACCA 1957849 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||||||||||||||||| || | ||||| || || ||||| Sbjct 1957848 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACAA 1957789 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || || | || ||||| |||||||| || Sbjct 1957788 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCG 1957753 >seq56 Length=5723395 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| ||| Sbjct 4239610 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239551 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 4239550 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 4239492 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||||| ||||||||||| || | ||||||||| |||||||| Sbjct 4239491 GCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4239432 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| ||||||| || | ||||| ||| Sbjct 4239431 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTCAGAGGGGGC 4239383 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 4239839 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4239780 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| ||||||||||| || ||| | |||| Sbjct 4239779 TGACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACC 4239721 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | ||||| ||||||||||| || | ||||||||| ||||||| Sbjct 4239720 AGCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 4239661 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| ||||||| || | ||||| ||| Sbjct 4239660 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTCAGAGGGGGC 4239611 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| ||| Sbjct 4239154 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239095 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| || |||||||| || ||| | ||||| Sbjct 4239094 GACACCATCGAGAACG-TCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCA 4239036 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 4239035 GCAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4238976 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| | || ||||| ||||| ||||| Sbjct 4238975 CATCCAGAAGGAGTCCACTCTGCACCTCGTCCTGCGCTTGAGGGGCGG 4238928 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| ||| Sbjct 4239382 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239323 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 4239322 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 4239264 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||||| ||||||||||| || | ||||||||| |||||||| Sbjct 4239263 GCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4239204 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| ||||||| || | ||||| ||| Sbjct 4239203 TATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGCCTCAGAGGGGGC 4239155 >seq101 Length=4626942 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| | || || || ||| | Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || | || |||||| |||| ||||| ||||||| ||| Sbjct 1982798 ATCCAAAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGAGGTGGC 1982751 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 1983209 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCC 1983150 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | || |||| || || ||||| || ||| | ||| Sbjct 1983149 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGAC 1983090 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| |||| || ||||| |||||||| || | ||||| || || ||| Sbjct 1983089 CAGCAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1983030 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||||| |||| ||||| |||| || ||| Sbjct 1983029 AACATCCAGAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGGGGTGGC 1982979 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 1982750 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 1982691 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 1982690 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982631 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 1982630 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982571 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || |||||| |||| ||||| |||| || ||| Sbjct 1982570 ATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCCTGAGGGGTGGC 1982523 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1982522 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1982463 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 1982462 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAG 1982403 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 1982402 CAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982343 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| || || |||| || ||| |||| || ||| Sbjct 1982342 ATCCAGAAAGAGTCGACTCTCCACCTGGTTCTTCGTCTGAGGGGTGGC 1982295 >seq376 Length=1707047 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || | |||||| ||||||||| |||| | | || ||| | Sbjct 762524 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCGAGGCCAAGCCCAGC 762583 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| ||||| || | ||||| Sbjct 762584 GACACCATTGAGAACG-TCAAAGCTAAAATCCGAGACAACGAGGGCATCTTTCCTGACCA 762642 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || | | || |||||||||| || | | | ||| || || ||||| Sbjct 762643 ACAGCGTCTGACCTTTGCCAGCAAACAGCTAGAACATGGCCACACTCTGTTAGATTACAA 762702 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || || | || ||||| |||||||| || Sbjct 762703 TATTCAGAAAGAGTCCACCCTGCACTTGGTGCTTCG 762738 >seq1935 Length=69431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 ||||||| ||||||| ||| | |||| || || | |||||||||| || |||| | Sbjct 45174 TTAAAGACAAAATCCAAGACTAGGAGGACATCTCCCCAGACCAACAGCACCTGATTTTTG 45233 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 ||||||||||||||| || | | | | ||| |||||||| ||| |||| || | | Sbjct 45234 TGGGCAAACAGCTGGAGGATGGCCACGCTCTCTCGGACTACAATATCTAAAAAGAGTCCA 45293 Query 38440 CGCTGCATTTGGTGCT 38455 | ||||| |||||||| Sbjct 45294 C-CTGCACTTGGTGCT 45308 >seq887 Length=554748 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||| || || || || || || | |||||| ||||||| | | || | ||| ||| | | Sbjct 107455 GCAGATCTTTGTGAAGACCCTGA-GGGCAAGACCATCATCCTTGAGGCTGAGCCCAGCAA 107397 Query 38306 CAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || | || | | | |||| ||||||| ||||||||||| || || | ||| | | Sbjct 107396 CACCAATGAGGATG-TCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCTGACTAGC 107338 Query 38365 AGCGG-CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 | || ||| || |||||||||||||| || | |||| |||| ||||||||| Sbjct 107337 CTCCATCTGATTCTTGCAGGCAAACAGCTGGAGGATGGCTGCACTCTCA--GACTACAAC 107280 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| || || | || |||||| ||||||| Sbjct 107279 ATCCAGAAAGAGTCCACCCTGCATGTGGTGCT 107248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500100343717760