Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq694 143 6e-29 seq56 141 2e-28 seq517 134 3e-26 seq695 132 1e-25 seq101 131 4e-25 seq26 123 6e-23 seq292 122 2e-22 seq376 107 4e-18 seq143 89.7 1e-12 >seq694 Length=814564 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| ||||| ||||||||||||| |||||||| ||||| || | | ||| | Sbjct 212161 GAGTCTCAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACG 212220 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| |||| || || || |||||||| ||||| Sbjct 212221 TCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTC 212280 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || || || || ||||| ||| || ||||| || Sbjct 212281 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGT 212340 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 212341 GATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 212379 >seq56 Length=5723395 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| ||||||||||| || || |||||||| || | || || Sbjct 4239161 TCTGAGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGT 4239220 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| || | || ||||| || || ||||| Sbjct 4239221 GCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 4239280 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || |||||||||||| |||||||| ||| ||||| || Sbjct 4239281 CTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 4239337 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 4239338 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||||||| Sbjct 4238946 ACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4239005 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || ||||| || || ||||| ||||| ||||| Sbjct 4239006 AGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 4239065 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 4239066 ATCTTCCCTTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 4239122 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 4239123 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239154 Score = 134 bits (148), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 4239617 TCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 4239676 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| || | || ||||| || || ||||| Sbjct 4239677 GCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 4239736 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || |||||||||||| |||||||| ||| ||||| || Sbjct 4239737 CTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 4239793 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || ||||| || || ||||| | |||||| Sbjct 4239794 CAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || |||||||| || || || ||||| || | || || Sbjct 4239389 TCTGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 4239448 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| || | || ||||| || || ||||| Sbjct 4239449 GCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 4239508 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || |||||||||||| |||||||| ||| ||||| || Sbjct 4239509 CTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 4239565 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 4239566 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610 >seq517 Length=1171097 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| ||||| |||||||||||||| ||||||| ||||| | | | ||| | Sbjct 1142632 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACG 1142573 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| |||| || || || |||||||| ||||| Sbjct 1142572 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 1142513 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || || || || ||||| ||| || || || || Sbjct 1142512 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGT 1142453 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 1142452 GATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1142414 >seq695 Length=815165 Score = 132 bits (146), Expect = 1e-25 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 16902 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 16843 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || |||| || || ||||| |||| || || || |||||||| ||||| Sbjct 16842 TCCATCTTCCAGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 16783 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || || || || ||||| ||| || || || || Sbjct 16782 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGT 16723 Query 195102 AACCGTCTTTCCTGTCAAAGTTTT-TACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | ||||| Sbjct 16722 GATGGTCTTCCCCGTTAGGGTTTTCAACGAAAATCTGCAT 16683 >seq101 Length=4626942 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 1982542 ACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1982601 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||| | || ||||| || || ||||| || || || || Sbjct 1982602 AGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 1982661 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || || || |||||||| ||| ||||||||| ||||| | ||| Sbjct 1982662 ATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGTTCCACTTCCAGGGTGATGGTC 1982718 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 1982719 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982750 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || || || || |||||||||||||| || |||||||| | |||||| Sbjct 1982757 TCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGAAAGAGT 1982816 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || || ||||| | || ||||| || || ||||| Sbjct 1982817 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCC 1982876 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || || || || || ||| || || || |||||||| ||||||||| || Sbjct 1982877 CTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCCACTTCCAG 1982936 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 1982937 GGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 1982998 ACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1983057 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||| | || ||||| || || ||||| || || ||||| Sbjct 1983058 AGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCTTGG 1983117 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || || || |||||||| ||| |||||| || ||||| | ||| Sbjct 1983118 ATCTTGGCCTTCACATTTTCGATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTC 1983174 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | ||||||| Sbjct 1983175 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTT 1983208 >seq26 Length=7528108 Score = 123 bits (136), Expect = 6e-23 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAA--GAGTT 194979 |||||||| ||||| |||||||||||||| |||||||| ||||| || | ||| ||| Sbjct 6810806 AGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGTA 6810747 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| || ||||| || || ||||| || | || || || |||||||| ||| Sbjct 6810746 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATTCCT 6810687 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || || ||||| || ||| || || || || || ||||| ||| || | || Sbjct 6810686 TCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGA 6810627 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| || || | ||||| | ||| | |||||| Sbjct 6810626 GTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCATT 6810585 >seq292 Length=3256830 Score = 122 bits (134), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || ||||||||||| | ||||| | |||||||| ||||| Sbjct 1957764 GTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCATCTTCCAGCTG 1957823 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || ||||| || || ||||| || || ||||| ||||| Sbjct 1957824 TTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTATCTTGGATTTT 1957883 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 || ||||||||||||||||| ||| || || || ||||| | ||||| || Sbjct 1957884 GGCTTTAACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTCTTGCC 1957940 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 1957941 CGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq376 Length=1707047 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| |||||||||||||| ||||| |||| ||| ||||| Sbjct 762727 GTGCAGGGTGGACTCTTTCTGAATATTGTAATCTAACAGAGTGTGGCCATGTTCTAGCTG 762668 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || | || ||| | || || |||||||| ||| ||||| || |||||| | ||||| Sbjct 762667 TTTGCTGGCAAAGGTCAGACGCTGTTGGTCAGGAAAGATGCCCTCGTTGTCTCGGATTTT 762608 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||||||||||||||||| Sbjct 762607 AGCTTTGACGTTCTCAATGGTGTC 762584 >seq143 Length=3665815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| ||| ||| ||||| ||||||||||||| |||| || | ||||| | Sbjct 1819766 AGTCTCAGCCAAAGATGAGGAGTGAACTCTTTTTGAATGTTGT-GTCAGACAGAGTACGT 1819708 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || | |||||| |||| || || || |||||||| ||||| Sbjct 1819707 CCATCTTTCAGTTGCTTGCCAGAGAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 1819648 Query 195043 TTGTCTTGAATTTT 195056 || || ||||| || Sbjct 1819647 TTATCCTGAATCTT 1819634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109316859664763