Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq61 188 8e-43 seq64 125 8e-24 seq86 107 2e-18 seq54 100 3e-16 >seq61 Length=5536230 Score = 188 bits (208), Expect = 8e-43 Identities = 594/899 (66%), Gaps = 25/899 (3%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||||| | ||||| || | |||| || |||||||| ||||| || || || Sbjct 436680 CATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC 436621 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| ||| |||||||| |||| |||||||| ||| | | | || || || Sbjct 436620 CAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGGAAACCTTGCGAAAACC 436561 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 || || | |||| || || | |||| |||||| || || | | || |||| Sbjct 436560 TAGCTCCCGCATAAGTCGGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CAAT 436502 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 | || || || | || ||||| | || ||| || | || |||| | | | | | Sbjct 436501 T-ATCCCAATGAGCTTCACAGGCAAGGCCTCTCGGAGGAGCTCCTGTTTTGTCCTAATGG 436443 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAA 18952 || |||| | || | | | || || | | | ||| | || || |||||||| | Sbjct 436442 TATC-GATA-ATTATTTCCTTCACTCTCCGCTCT-GAAGGTTTATGGACCAGATGTTTGA 436386 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||||| ||| ||||| ||||| ||| ||||| |||| || | |||| | |||| Sbjct 436385 ACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTCACTGGAAA 436326 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 || | |||||||||||| | || | | | ||||||||| | || | || |||| Sbjct 436325 CCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGAAGAACCAG 436266 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||| || ||||| | || ||||| || || | | ||| ||||| ||| || | Sbjct 436265 CAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGCAGCTTCTT 436206 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | | |||||| || |||||||| |||| ||| ||| | || ||||| |||| | Sbjct 436205 TGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCATCGTCTGGA 436146 Query 19193 TAGAATTAAATAGATACATACGCT--CATCTGTATCTTTAACATATGCATCTATCAATAA 19250 | | | || || || || | || | | | |||||||| | | | || || | | Sbjct 436145 TGGTGCTGAAGAG-TA-ATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGATGAGAAG 436088 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| |||||||| ||||| | ||||| || || | || || || | ||||| | || Sbjct 436087 ACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACAGCGAGC 436028 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCT-TTCGACCAAATTTTCATTAACTATTCCAT 19369 |||| | ||||| |||| || || || ||| ||| | |||||||| ||||| |||| Sbjct 436027 TTCTCTAATCTGAACTTGGCTCCA----CTGTTCCACCCAGTTTTCATTTACTATACCAT 435972 Query 19370 CACTAGCTGCAAAAAATGCTAATACATG---TTTAATAAAATGTTTTTCATCTGAGGTTA 19426 | | || ||||| || || | || || | ||||||| |||| || | | || Sbjct 435971 CCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAG-GCTTC 435913 Query 19427 ATGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 | | ||| ||| | | ||| || || || | | | || || ||| |||||| ||| ||| Sbjct 435912 AGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAAGGAA 435855 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||| ||||| ||| |||| | ||| | |||| | || | |||| || || ||||| Sbjct 435854 GCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGACAAA 435796 >seq64 Length=5459255 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 1613452 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 1613451 ACCACTCTTTCCCC 1613438 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||| Sbjct 1605375 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 1605319 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421 || ||||||| || |||||||| Sbjct 1605318 TGTGAGAGATAAAATACTTCTCATCTGA 1605291 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || ||| Sbjct 1627844 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTC 1627785 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 1627784 CATAAAATCAAAGGGATTTT 1627765 >seq86 Length=5199016 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || ||||| ||||| || || Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 122736 TTTCTTATACCATA 122749 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| || |||| || | || || || | Sbjct 120069 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCGATGTGGATGT 120128 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||||||||||| | | || | Sbjct 120129 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACAGTTT 120188 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | |||| || ||||| || || ||||||| ||| || | ||| || || Sbjct 120189 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 120237 >seq54 Length=5886867 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || | ||| |||||||| Sbjct 1573464 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 1573521 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | |||| || |||||||| ||||| || || || | ||| ||| Sbjct 1573522 CTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 1573581 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 1573582 TCCATAAAGTCAAATGGATTTTCTAC 1573607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| | Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || || || | Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062 Query 19103 CAAC 19106 | || Sbjct 1575063 CCAC 1575066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562027371513960