Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq61 188 8e-43
seq64 125 8e-24
seq86 107 2e-18
seq54 100 3e-16
>seq61
Length=5536230
Score = 188 bits (208), Expect = 8e-43
Identities = 594/899 (66%), Gaps = 25/899 (3%)
Strand=Plus/Minus
Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716
||| |||||||| | ||||| || | |||| || |||||||| ||||| || || ||
Sbjct 436680 CATCACTCCCATCCTCTGATACACGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTC 436621
Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776
| ||| ||| |||||||| |||| |||||||| ||| | | | || || ||
Sbjct 436620 CAGTGAAATATTCTCCATAAAGTCAAGTGGATTTTCTACTCTGGAAACCTTGCGAAAACC 436561
Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835
|| || | |||| || || | |||| |||||| || || | | || ||||
Sbjct 436560 TAGCTCCCGCATAAGTCGGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CAAT 436502
Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895
| || || || | || ||||| | || ||| || | || |||| | | | | |
Sbjct 436501 T-ATCCCAATGAGCTTCACAGGCAAGGCCTCTCGGAGGAGCTCCTGTTTTGTCCTAATGG 436443
Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAA 18952
|| |||| | || | | | || || | | | ||| | || || |||||||| |
Sbjct 436442 TATC-GATA-ATTATTTCCTTCACTCTCCGCTCT-GAAGGTTTATGGACCAGATGTTTGA 436386
Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012
|||||| ||| ||||| ||||| ||| ||||| |||| || | |||| | ||||
Sbjct 436385 ACATCAGACAGGCAAAGTCACAGCGTAAACCCTCACCTCTGCTAAGAGGTTCACTGGAAA 436326
Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072
|| | |||||||||||| | || | | | ||||||||| | || | || ||||
Sbjct 436325 CCGTGAGACCAGGCATCAGGCTGCTATCCTGGAGCCAGAATATCCACACAGAAGAACCAG 436266
Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132
|||| || ||||| | || ||||| || || | | ||| ||||| ||| || |
Sbjct 436265 CAAAGGGGATTCCTTCCATGGCAGCAAAGGCCACAACCCGTTCCCCATAGGCAGCTTCTT 436206
Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192
| | |||||| || |||||||| |||| ||| ||| | || ||||| |||| |
Sbjct 436205 TGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTTCCGCAAGGCATCGTCTGGA 436146
Query 19193 TAGAATTAAATAGATACATACGCT--CATCTGTATCTTTAACATATGCATCTATCAATAA 19250
| | | || || || || | || | | | |||||||| | | | || || | |
Sbjct 436145 TGGTGCTGAAGAG-TA-ATTCCCTTGCTTTGGCATCTTTAATAGAAGTGTCGATGAGAAG 436088
Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310
||| |||||||| ||||| | ||||| || || | || || || | ||||| | ||
Sbjct 436087 ACTATACATTTCAGAATGGTTGTTTTCCATGGCAGTTTGGAAGCCATGCAAACAGCGAGC 436028
Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCT-TTCGACCAAATTTTCATTAACTATTCCAT 19369
|||| | ||||| |||| || || || ||| ||| | |||||||| ||||| ||||
Sbjct 436027 TTCTCTAATCTGAACTTGGCTCCA----CTGTTCCACCCAGTTTTCATTTACTATACCAT 435972
Query 19370 CACTAGCTGCAAAAAATGCTAATACATG---TTTAATAAAATGTTTTTCATCTGAGGTTA 19426
| | || ||||| || || | || || | ||||||| |||| || | | ||
Sbjct 435971 CCCCGGCCGCAAAGAAAGCCAGAACGTGGCAGTGTATAAAATCGCTTTCCTCAG-GCTTC 435913
Query 19427 ATGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485
| | ||| ||| | | ||| || || || | | | || || ||| |||||| ||| |||
Sbjct 435912 AGGGATTCCCAGTGCTGAATGTCCTTGGAAAGAGCCACCTC-TCAGCTGTCC-AAAGGAA 435855
Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
||||| ||||| ||| |||| | ||| | |||| | || | |||| || || |||||
Sbjct 435854 GCCTCAGCTTTCTTACACATCTGCCAAAGATCATGGTACTCCATAGTGAAGATGACAAA 435796
>seq64
Length=5459255
Score = 125 bits (138), Expect = 8e-24
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| |||
Sbjct 1613571 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCTTT 1613512
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||||||
Sbjct 1613511 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 1613452
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 1613451 ACCACTCTTTCCCC 1613438
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/88 (82%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct 1605375 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 1605319
Query 19394 CATGTTTAATAAAATGTTTTTCATCTGA 19421
|| ||||||| || ||||||||
Sbjct 1605318 TGTGAGAGATAAAATACTTCTCATCTGA 1605291
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
|||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || |||
Sbjct 1627844 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTC 1627785
Query 18732 CATAAAATCAAATGGATTTT 18751
|||||||||||| |||||||
Sbjct 1627784 CATAAAATCAAAGGGATTTT 1627765
>seq86
Length=5199016
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || || || ||||| ||||| || ||
Sbjct 122616 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 122675
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 122676 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 122735
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 122736 TTTCTTATACCATA 122749
Score = 89.7 bits (98), Expect = 6e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| || |||| || | || || || |
Sbjct 120069 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCGATGTGGATGT 120128
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||| ||||||||||| | | || |
Sbjct 120129 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACAGTTT 120188
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| |||| || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 120189 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 120237
>seq54
Length=5886867
Score = 100 bits (110), Expect = 3e-16
Identities = 111/146 (76%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || | ||| ||||||||
Sbjct 1573464 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 1573521
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | |||| || |||||||| ||||| || || || | ||| |||
Sbjct 1573522 CTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 1573581
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 1573582 TCCATAAAGTCAAATGGATTTTCTAC 1573607
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| |
Sbjct 1574943 CCTCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 1575002
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| || || || || |
Sbjct 1575003 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGG 1575062
Query 19103 CAAC 19106
| ||
Sbjct 1575063 CCAC 1575066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562027371513960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |