Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq448 100 4e-16
seq77 87.8 2e-12
seq683 82.4 1e-10
>seq448
Length=1380330
Score = 100 bits (110), Expect = 4e-16
Identities = 167/239 (70%), Gaps = 7/239 (3%)
Strand=Plus/Plus
Query 2228 CAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGA 2287
|||||||| |||||| || | ||| ||| |||||||| |||||||| ||||| ||
Sbjct 671847 CAATCACACCTGGCTGTCTGCGACTGGGACCTGTGAGATCCACCTGACCTGCTCTGTGGA 671906
Query 2288 GGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGC-- 2345
| || | || |||| ||| | | | ||| ||| ||| | | || | ||||
Sbjct 671907 GAATTCAAAGGACA---TCTTCCTAAGGTGGCAGG--TTGTACGAAACACATCTATAAAT 671961
Query 2346 GAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGC 2405
|| | |||||||| | ||||||||||||||||| |||| ||||| | ||| |||
Sbjct 671962 GACGCAAACCTCACTATCTCCTGGGACCCCAGGAGTTCTGGTGAACAGAAGTTCACCTGC 672021
Query 2406 ATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGAAGCTGTGTGA 2464
| || || ||| |||| ||||| | || ||| | ||||| || |||| || |||||
Sbjct 672022 GTAGCTGAGAACCCTGTCAGCAACGTATCCTTCTCTGTCTCCGCTCAGAGTCTCTGTGA 672080
>seq77
Length=5040741
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229
|||| | || ||||| || || | ||||||||||| ||| ||||||||||| || |
Sbjct 994945 CGGGCAGCCCCTCATGCTGCACATGGCATGTGTATCTCAGCTCCTCTCCAGAAGGCACTA 994886
Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289
| | ||| |||| || || || || ||||| || || || | || || | ||||||
Sbjct 994885 CCACAGCCGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCTG 994826
Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349
| || || | |||||||| || | || | ||| || | | || || || || || |
Sbjct 994825 TGTCCTGGGTCTGATCTTCCCCACCACGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGA 994766
Query 14350 AACCCAAAGCCCAGCACC 14367
| |||| ||||||||||
Sbjct 994765 AGCCCAGGGCCCAGCACC 994748
>seq683
Length=833057
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| || || || || | ||||||||||| | ||| ||||||||||| || || | |||
Sbjct 218350 CCCTCGTGCTGCACATGGCATGTGTATCTTGGCTCCTCTCCAGAAGGCACCACCAGAGCC 218291
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
||||| || || || | |||||||| || || | || || | ||||||| || ||
Sbjct 218290 ACCCACTTCTGGAAGTTTCCATCTCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGG 218231
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | || || | || || | ||| || | | || ||||| || || || ||||
Sbjct 218230 GTCAGGTCCTCCCTATCCCGCTGCCAGGTCAGGGTGATCTCAGCAGGGTAGAAGCCCAGG 218171
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 218170 GCCCAGCACC 218161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629192040462440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |