Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq448 100 4e-16 seq77 87.8 2e-12 seq683 82.4 1e-10 >seq448 Length=1380330 Score = 100 bits (110), Expect = 4e-16 Identities = 167/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 2228 CAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGA 2287 |||||||| |||||| || | ||| ||| |||||||| |||||||| ||||| || Sbjct 671847 CAATCACACCTGGCTGTCTGCGACTGGGACCTGTGAGATCCACCTGACCTGCTCTGTGGA 671906 Query 2288 GGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGC-- 2345 | || | || |||| ||| | | | ||| ||| ||| | | || | |||| Sbjct 671907 GAATTCAAAGGACA---TCTTCCTAAGGTGGCAGG--TTGTACGAAACACATCTATAAAT 671961 Query 2346 GAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGC 2405 || | |||||||| | ||||||||||||||||| |||| ||||| | ||| ||| Sbjct 671962 GACGCAAACCTCACTATCTCCTGGGACCCCAGGAGTTCTGGTGAACAGAAGTTCACCTGC 672021 Query 2406 ATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGAAGCTGTGTGA 2464 | || || ||| |||| ||||| | || ||| | ||||| || |||| || ||||| Sbjct 672022 GTAGCTGAGAACCCTGTCAGCAACGTATCCTTCTCTGTCTCCGCTCAGAGTCTCTGTGA 672080 >seq77 Length=5040741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||| | || ||||| || || | ||||||||||| ||| ||||||||||| || | Sbjct 994945 CGGGCAGCCCCTCATGCTGCACATGGCATGTGTATCTCAGCTCCTCTCCAGAAGGCACTA 994886 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | | ||| |||| || || || || ||||| || || || | || || | |||||| Sbjct 994885 CCACAGCCGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCTG 994826 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | || || | |||||||| || | || | ||| || | | || || || || || | Sbjct 994825 TGTCCTGGGTCTGATCTTCCCCACCACGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGA 994766 Query 14350 AACCCAAAGCCCAGCACC 14367 | |||| |||||||||| Sbjct 994765 AGCCCAGGGCCCAGCACC 994748 >seq683 Length=833057 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| | ||| ||||||||||| || || | ||| Sbjct 218350 CCCTCGTGCTGCACATGGCATGTGTATCTTGGCTCCTCTCCAGAAGGCACCACCAGAGCC 218291 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 ||||| || || || | |||||||| || || | || || | ||||||| || || Sbjct 218290 ACCCACTTCTGGAAGTTTCCATCTCCTGCAGGCCTGGTCTCCACAAGCTCTGTGTCCTGG 218231 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | || || | || || | ||| || | | || ||||| || || || |||| Sbjct 218230 GTCAGGTCCTCCCTATCCCGCTGCCAGGTCAGGGTGATCTCAGCAGGGTAGAAGCCCAGG 218171 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 218170 GCCCAGCACC 218161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629192040462440