Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq64 111 2e-19
seq54 89.7 6e-13
seq61 87.8 2e-12
>seq64
Length=5459255
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| |
Sbjct 1613573 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCT 1613514
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 1613513 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 1613454
Query 37318 CTAC 37321
| ||
Sbjct 1613453 CCAC 1613450
Score = 82.4 bits (90), Expect = 9e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
|||||| ||| |||||||| | || || |||||||| || ||||||| || || |||||
Sbjct 1627844 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTC 1627785
Query 36947 CATAAAATCAAATGGATT 36964
|||||||||||| |||||
Sbjct 1627784 CATAAAATCAAAGGGATT 1627767
>seq54
Length=5886867
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || ||||| | || | ||| ||
Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| |||||||| ||||||||||| || ||||| || || || || ||
Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064
Query 37320 ACAA 37323
||||
Sbjct 1575065 ACAA 1575068
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||| |||||||| | ||||| || || ||||| | || || || || ||||| |||||
Sbjct 1573509 CATCACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTC 1573568
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964
||||| ||||| |||||||| |||||||||||
Sbjct 1573569 CAGTGAAATATTCTCCATAAAGTCAAATGGATT 1573601
>seq61
Length=5536230
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/201 (71%), Gaps = 10/201 (5%)
Strand=Plus/Minus
Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498
|||| | ||| |||| || || || | ||||||||||||||| || | ||||| || ||
Sbjct 436114 ATCTTTAATAGAAGTGTCGATGAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGC 436055
Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCT 37557
| || || |||| ||||| | |||||| |||| ||||| | | | | || |
Sbjct 436054 AGTTTGGAAGCCATGCAAACAGCGAGCTTC-TCTAATCTGAACTTGGCTCCA----CTGT 436000
Query 37558 T-AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACAT---AT 37613
| | |||||||||| ||||| ||||| | || ||||||||||| ||||| | |
Sbjct 435999 TCCACCCAGTTTTCATTTACTATACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAG 435940
Query 37614 TTTATAAAATGTCTTTCATCA 37634
| |||||||| ||||| |||
Sbjct 435939 TGTATAAAATCGCTTTCCTCA 435919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592230995507560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |