Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq64 111 2e-19 seq54 89.7 6e-13 seq61 87.8 2e-12 >seq64 Length=5459255 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 1613573 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATGAGACCTCTTTTCT 1613514 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1613513 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 1613454 Query 37318 CTAC 37321 | || Sbjct 1613453 CCAC 1613450 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 |||||| ||| |||||||| | || || |||||||| || ||||||| || || ||||| Sbjct 1627844 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTC 1627785 Query 36947 CATAAAATCAAATGGATT 36964 |||||||||||| ||||| Sbjct 1627784 CATAAAATCAAAGGGATT 1627767 >seq54 Length=5886867 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | || | ||| || Sbjct 1574945 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 1575004 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| |||||||| ||||||||||| || ||||| || || || || || Sbjct 1575005 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCGAAGGCC 1575064 Query 37320 ACAA 37323 |||| Sbjct 1575065 ACAA 1575068 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || || ||||| ||||| Sbjct 1573509 CATCACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTC 1573568 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| ||||| |||||||| ||||||||||| Sbjct 1573569 CAGTGAAATATTCTCCATAAAGTCAAATGGATT 1573601 >seq61 Length=5536230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/201 (71%), Gaps = 10/201 (5%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | ||| |||| || || || | ||||||||||||||| || | ||||| || || Sbjct 436114 ATCTTTAATAGAAGTGTCGATGAGAAGACTATACATTTCAGAATGGTTGTTTTCCATGGC 436055 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCT 37557 | || || |||| ||||| | |||||| |||| ||||| | | | | || | Sbjct 436054 AGTTTGGAAGCCATGCAAACAGCGAGCTTC-TCTAATCTGAACTTGGCTCCA----CTGT 436000 Query 37558 T-AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACAT---AT 37613 | | |||||||||| ||||| ||||| | || ||||||||||| ||||| | | Sbjct 435999 TCCACCCAGTTTTCATTTACTATACCATCCCCGGCCGCAAAGAAAGCCAGAACGTGGCAG 435940 Query 37614 TTTATAAAATGTCTTTCATCA 37634 | |||||||| ||||| ||| Sbjct 435939 TGTATAAAATCGCTTTCCTCA 435919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592230995507560