Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq292 105 5e-18
seq101 96.9 3e-15
seq694 89.7 4e-13
seq517 89.7 4e-13
>seq292
Length=3256830
Score = 105 bits (116), Expect = 5e-18
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| |||| || || | |||||| || || ||| |||||| || ||||||||||||||
Sbjct 1957740 GCCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGA 1957799
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| ||| || || ||||| ||||| ||||| || || | |||
Sbjct 1957800 CAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGG 1957859
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCC 48716
| ||||||||| || || ||| | |||| | | || | | | || | |||
Sbjct 1957860 GATGCCCTCCTTATCTTGGAT-TTTGGCTTTAACGTTCTCA-ATGGTGTCACTGGGCTCG 1957917
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||| | || || || || ||||||| || || ||||| |||||||||
Sbjct 1957918 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATC 1957968
>seq101
Length=4626942
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || |||| |||| ||| || ||| |||||| || || |||||||||||
Sbjct 1982979 GCCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1983038
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| |||||| |||||||| || || | ||| || || | |||
Sbjct 1983039 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1983098
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||| || ||||| || ||| | | | || | |||||
Sbjct 1983099 GATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCAC 1983158
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || || || |||| || || || || ||||||||
Sbjct 1983159 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1983206
Score = 95.1 bits (104), Expect = 9e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || |||| |||| ||| || ||| |||||| || || |||||||||||
Sbjct 1982523 GCCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 1982582
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| |||||| |||||||| || || | ||| || || | |||
Sbjct 1982583 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1982642
Query 48659 AACGCCCTCCTTGTC 48673
| ||||||||| ||
Sbjct 1982643 GATGCCCTCCTTATC 1982657
Score = 95.1 bits (104), Expect = 9e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || || || |||| |||| ||| || ||| ||||||||| || |||||||||||
Sbjct 1982751 GCCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGA 1982810
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| |||||| |||||||| || || | ||| || || | |||
Sbjct 1982811 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1982870
Query 48659 AACGCCCTCCTTGTC 48673
| ||||||||| ||
Sbjct 1982871 GATGCCCTCCTTATC 1982885
>seq694
Length=814564
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || ||| || |||||||| ||||| ||||| | | | || | ||
Sbjct 212167 CAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 212226
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| || |||| ||| ||||| | |||| || ||||| ||
Sbjct 212227 TTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 212286
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| |||||| | | | || || | || ||||| | || || ||
Sbjct 212287 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 212346
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||||| | ||||| || |||||||||||| ||
Sbjct 212347 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 212383
>seq517
Length=1171097
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || ||| ||| ||||||| ||||| | ||| | | | || | ||
Sbjct 1142626 CAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACGTCCATC 1142567
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| ||
Sbjct 1142566 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1142507
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| |||||| | | | || || | || ||||| | || || ||
Sbjct 1142506 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 1142447
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||||| | ||||| || |||||||||||| ||
Sbjct 1142446 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 1142410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380883796016247
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |