Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq292 105 5e-18 seq101 96.9 3e-15 seq694 89.7 4e-13 seq517 89.7 4e-13 >seq292 Length=3256830 Score = 105 bits (116), Expect = 5e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || || | |||||| || || ||| |||||| || |||||||||||||| Sbjct 1957740 GCCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGA 1957799 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| ||| || || ||||| ||||| ||||| || || | ||| Sbjct 1957800 CAGAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGG 1957859 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCC 48716 | ||||||||| || || ||| | |||| | | || | | | || | ||| Sbjct 1957860 GATGCCCTCCTTATCTTGGAT-TTTGGCTTTAACGTTCTCA-ATGGTGTCACTGGGCTCG 1957917 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | || || || || ||||||| || || ||||| ||||||||| Sbjct 1957918 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATC 1957968 >seq101 Length=4626942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| |||||| || || ||||||||||| Sbjct 1982979 GCCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1983038 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || || | ||| || || | ||| Sbjct 1983039 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1983098 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | || | ||||| Sbjct 1983099 GATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCAC 1983158 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 1983159 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1983206 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| |||||| || || ||||||||||| Sbjct 1982523 GCCACCCCTCAGGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGA 1982582 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || || | ||| || || | ||| Sbjct 1982583 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1982642 Query 48659 AACGCCCTCCTTGTC 48673 | ||||||||| || Sbjct 1982643 GATGCCCTCCTTATC 1982657 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||| ||| || ||| ||||||||| || ||||||||||| Sbjct 1982751 GCCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCAGA 1982810 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || || | ||| || || | ||| Sbjct 1982811 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGG 1982870 Query 48659 AACGCCCTCCTTGTC 48673 | ||||||||| || Sbjct 1982871 GATGCCCTCCTTATC 1982885 >seq694 Length=814564 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| || |||||||| ||||| ||||| | | | || | || Sbjct 212167 CAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 212226 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| || |||| ||| ||||| | |||| || ||||| || Sbjct 212227 TTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 212286 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| |||||| | | | || || | || ||||| | || || || Sbjct 212287 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGT 212346 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | ||||| || |||||||||||| || Sbjct 212347 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 212383 >seq517 Length=1171097 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| ||||||| ||||| | ||| | | | || | || Sbjct 1142626 CAACACAAGATGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACGTCCATC 1142567 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 1142566 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 1142507 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| |||||| | | | || || | || ||||| | || || || Sbjct 1142506 CTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 1142447 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | ||||| || |||||||||||| || Sbjct 1142446 CTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCCTG 1142410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380883796016247