Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq136 434 1e-116
seq59 127 2e-24
seq34 107 2e-18
seq291 87.8 2e-12
>seq136
Length=3786782
Score = 434 bits (480), Expect = 1e-116
Identities = 685/978 (70%), Gaps = 9/978 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || ||||||||| |||||| || || ||
Sbjct 1750626 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACGTCCGTGTCGAACTTGTTGGC 1750685
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| | | | | || ||||||| || ||| |||| ||||||||||| ||
Sbjct 1750686 AAACAAGTGGTG--CCTGC-GAAGCATCCAGTTCAAGTCACCGGCTCCGAACACGCACAC 1750742
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|||||| | ||| || || |||| || ||||| | || || || | |||||||| ||
Sbjct 1750743 GGAACGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCGCCCTTGGAAACGTCACCCTC 1750802
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
| ||||||||||||| |||||||| || ||||| |||||||| || ||||||| || |
Sbjct 1750803 GAAGTACTGCCACTTGACAAACCTCGCGATCGCGTGCATGTCAGACATGTCGTACTTCTG 1750862
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | || || || || | || || | ||| | |||||||| || | ||
Sbjct 1750863 GCTTAAGGACAGGGAGCCCGGGACATCTGGGATCCTCTGAATAGTGGCCCAGAGATACTC 1750922
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| |||||||| | ||| |||||||||| | |||| | | ||
Sbjct 1750923 ATCCGGGCTGTAGGTGTCCTTTGCCCACTCCATGAACTTTTGGATTTTTTCATTCTCTAG 1750982
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|||| ||||| || | || || || || || ||||| ||||| | ||| |
Sbjct 1750983 CACGTACCCCACGTACTTCCTACTGACCACGAAATAGGCACTGCCTGAGAACAGGGGTGT 1751042
Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531
| ||| ||| ||||||| || ||||| | || | ||| || || | |
Sbjct 1751043 TTCAAGAGGAGGCTGCGCTTTGTCAGTCCCTGTGTTCGTCAGCTTTCCGTTAACAACCTT 1751102
Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591
| |||| |||||||| | | |||| | |||||| | || || || || ||||
Sbjct 1751103 ATAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATCCTCTCGGTTTCGAGGTTGTT 1751162
Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651
| | || |||||| || |||| | ||| || || | ||| ||||| | ||||| ||
Sbjct 1751163 GTCCCCCATGAGCGACTTGAGCTTCCGGACAATTTCCAAGTTGGTCTTAATAGGAAAATC 1751222
Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711
||||||| | || |||| ||||||||| | ||| ||| || ||||| |||
Sbjct 1751223 CATACCGCAAAGATTGATCAAGTACTTCCAGTCCGCCTTCATCCTGTAGAGGTCTTGCAT 1751282
Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771
||| || | || |||||||| || ||||| ||||||||||| || |||| || | |||
Sbjct 1751283 GCAGTTGAGGTCGGCCTGCACCCGACTCCACGAAGCGTACACCACACTCTCCAGCTGACT 1751342
Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACAT 160828
|||||| ||||||||| ||| || || |||| || |||| | |||| |||| |
Sbjct 1751343 GGCCACGAAGACGTTACTGAAGCAGGATGCGATGCCAATCACCGCGGCCAAAAAGGA--- 1751399
Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888
| |||| ||||| ||||||||| | ||| || | ||||||||||| |||||||||||
Sbjct 1751400 GTCCTCCGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCGCATAGATGGCCCT 1751459
Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948
|| | ||| || | ||| || || || ||||||| ||| ||||||||||| || |||||
Sbjct 1751460 CAGGAGCCTGTCAAGCATTTCGATTTTGTGATGGACCACCATAGAGTAGGCGATGGGAAA 1751519
Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008
||| | |||||| || |||| | | |||||| ||| |||||| ||| |||
Sbjct 1751520 CTCTGCCTCCTCTTTGCTGAGGGGTTGCATGATGTACTTGCGCCCCTTGATGAAAGAATT 1751579
Query 161009 ACAATCCCGCGTCATGTT 161026
||||||| ||||||||
Sbjct 1751580 GCAATCCCTGGTCATGTT 1751597
>seq59
Length=5595854
Score = 127 bits (140), Expect = 2e-24
Identities = 221/320 (69%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
|| || | ||| | | |||| || ||||| || || || || || | |||||||||| ||
Sbjct 4351743 AGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATGGAAGAGGCACTTG 4351802
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || ||||| ||||| | |||||||||||| || || | |||||||| ||| ||
Sbjct 4351803 TAACACCCTTCATCCTCTAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCC 4351862
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| || || || || | || ||||| | || || || ||||| || ||||| | |
Sbjct 4351863 AGCTCGGTGATATTTATCTTGTCCTTATAGGCGGGCTGGACCACAACCCCATGGTTTTTG 4351922
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||||||||| |||||| ||||||| | ||| | |||||||| || || ||||
Sbjct 4351923 CTGAAGGTGATCATGTTTTCCGGGCCAACAGGCTTGACTTTCTGCCATGTCACAATCAAG 4351982
Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
| ||| |||| | ||||| || ||||| | ||||| || |||||||| | |
Sbjct 4351983 A---CTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTCCATTCAGCAGCTTT 4352039
Query 168450 CGCTCATCTTGAGTTACGAC 168469
|||| ||| || || ||
Sbjct 4352040 TTTTCATTTTGGGTCACCAC 4352059
>seq34
Length=7345761
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| || |||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 5067745 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 5067686
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || |||||||||| || || || || | ||| | ||||| | | |||
Sbjct 5067685 GGAATATAATTCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCT 5067626
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
| || | |||| |||||||| |||||| || |||| ||||||||||||||||
Sbjct 5067625 AGAAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 5067566
Query 176412 AAATAGAACTTACA 176425
| |||||| || ||
Sbjct 5067565 AGATAGAATTTGCA 5067552
>seq291
Length=2225859
Score = 87.8 bits (96), Expect = 2e-12
Identities = 171/253 (68%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179
||||| ||| || || |||||||||| ||| || | ||| | || ||||| || ||
Sbjct 1771993 GGTGATGGTTTTGAAGAATCCAGTGCAGGTCCCCAGTCCCATAAACACAGACCGACCGCC 1771934
Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239
||| || |||||| | ||| | || || | ||||| || || | || |
Sbjct 1771933 GGTGGGTTCCAGAGCAAGGTGCGTAAGGTGCACCCCTACTGACGTCTCCCTCATGGTTTT 1771874
Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299
||||||| || | |||||| || || |||||||||| ||| | ||| ||
Sbjct 1771873 GCCACTTGACCAGCCTGGCGATGGCAGTCATGTCGGAGATGTGAAACTTGGGGTGGTAGG 1771814
Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359
||| | ||| || | | || | ||||| |||||||||||||| || ||||||||||
Sbjct 1771813 GAATAGAACCCGGCATCCACGGTGTGCGCTGCAGGGTGGCCCACAGATGCTCGTCGGGGC 1771754
Query 160360 TGTACGTGTCCTT 160372
| || ||||| ||
Sbjct 1771753 TATAGGTGTCTTT 1771741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577135582583640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |