Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq136 434 1e-116 seq59 127 2e-24 seq34 107 2e-18 seq291 87.8 2e-12 >seq136 Length=3786782 Score = 434 bits (480), Expect = 1e-116 Identities = 685/978 (70%), Gaps = 9/978 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || ||||||||| |||||| || || || Sbjct 1750626 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACGTCCGTGTCGAACTTGTTGGC 1750685 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | | || ||||||| || ||| |||| ||||||||||| || Sbjct 1750686 AAACAAGTGGTG--CCTGC-GAAGCATCCAGTTCAAGTCACCGGCTCCGAACACGCACAC 1750742 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 |||||| | ||| || || |||| || ||||| | || || || | |||||||| || Sbjct 1750743 GGAACGCACGTGGACCCCACTGCAGGGTGGGTAGGGGGCGCCCTTGGAAACGTCACCCTC 1750802 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || ||||| |||||||| || ||||||| || | Sbjct 1750803 GAAGTACTGCCACTTGACAAACCTCGCGATCGCGTGCATGTCAGACATGTCGTACTTCTG 1750862 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || || | || || | ||| | |||||||| || | || Sbjct 1750863 GCTTAAGGACAGGGAGCCCGGGACATCTGGGATCCTCTGAATAGTGGCCCAGAGATACTC 1750922 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| |||||||| | ||| |||||||||| | |||| | | || Sbjct 1750923 ATCCGGGCTGTAGGTGTCCTTTGCCCACTCCATGAACTTTTGGATTTTTTCATTCTCTAG 1750982 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| ||||| || | || || || || || ||||| ||||| | ||| | Sbjct 1750983 CACGTACCCCACGTACTTCCTACTGACCACGAAATAGGCACTGCCTGAGAACAGGGGTGT 1751042 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| ||| ||||||| || ||||| | || | ||| || || | | Sbjct 1751043 TTCAAGAGGAGGCTGCGCTTTGTCAGTCCCTGTGTTCGTCAGCTTTCCGTTAACAACCTT 1751102 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 | |||| |||||||| | | |||| | |||||| | || || || || |||| Sbjct 1751103 ATAATGCTTTTTCCACCTTTCTTTTTTGTTGGATGGCATCCTCTCGGTTTCGAGGTTGTT 1751162 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 | | || |||||| || |||| | ||| || || | ||| ||||| | ||||| || Sbjct 1751163 GTCCCCCATGAGCGACTTGAGCTTCCGGACAATTTCCAAGTTGGTCTTAATAGGAAAATC 1751222 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 ||||||| | || |||| ||||||||| | ||| ||| || ||||| ||| Sbjct 1751223 CATACCGCAAAGATTGATCAAGTACTTCCAGTCCGCCTTCATCCTGTAGAGGTCTTGCAT 1751282 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || |||||||| || ||||| ||||||||||| || |||| || | ||| Sbjct 1751283 GCAGTTGAGGTCGGCCTGCACCCGACTCCACGAAGCGTACACCACACTCTCCAGCTGACT 1751342 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACAT 160828 |||||| ||||||||| ||| || || |||| || |||| | |||| |||| | Sbjct 1751343 GGCCACGAAGACGTTACTGAAGCAGGATGCGATGCCAATCACCGCGGCCAAAAAGGA--- 1751399 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | |||| ||||| ||||||||| | ||| || | ||||||||||| ||||||||||| Sbjct 1751400 GTCCTCCGACTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCGCATAGATGGCCCT 1751459 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||||| ||| ||||||||||| || ||||| Sbjct 1751460 CAGGAGCCTGTCAAGCATTTCGATTTTGTGATGGACCACCATAGAGTAGGCGATGGGAAA 1751519 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | |||||| || |||| | | |||||| ||| |||||| ||| ||| Sbjct 1751520 CTCTGCCTCCTCTTTGCTGAGGGGTTGCATGATGTACTTGCGCCCCTTGATGAAAGAATT 1751579 Query 161009 ACAATCCCGCGTCATGTT 161026 ||||||| |||||||| Sbjct 1751580 GCAATCCCTGGTCATGTT 1751597 >seq59 Length=5595854 Score = 127 bits (140), Expect = 2e-24 Identities = 221/320 (69%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| || ||||| || || || || || | |||||||||| || Sbjct 4351743 AGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATGGAAGAGGCACTTG 4351802 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||| | |||||||||||| || || | |||||||| ||| || Sbjct 4351803 TAACACCCTTCATCCTCTAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTTGAGTTCC 4351862 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | || || || || | || ||||| | || || || ||||| || ||||| | | Sbjct 4351863 AGCTCGGTGATATTTATCTTGTCCTTATAGGCGGGCTGGACCACAACCCCATGGTTTTTG 4351922 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| |||||| ||||||| | ||| | |||||||| || || |||| Sbjct 4351923 CTGAAGGTGATCATGTTTTCCGGGCCAACAGGCTTGACTTTCTGCCATGTCACAATCAAG 4351982 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | ||| |||| | ||||| || ||||| | ||||| || |||||||| | | Sbjct 4351983 A---CTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTCCATTCAGCAGCTTT 4352039 Query 168450 CGCTCATCTTGAGTTACGAC 168469 |||| ||| || || || Sbjct 4352040 TTTTCATTTTGGGTCACCAC 4352059 >seq34 Length=7345761 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 5067745 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 5067686 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | ||||| | | ||| Sbjct 5067685 GGAATATAATTCTCATAATTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCT 5067626 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | |||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 5067625 AGAAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAA 5067566 Query 176412 AAATAGAACTTACA 176425 | |||||| || || Sbjct 5067565 AGATAGAATTTGCA 5067552 >seq291 Length=2225859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| ||| || || |||||||||| ||| || | ||| | || ||||| || || Sbjct 1771993 GGTGATGGTTTTGAAGAATCCAGTGCAGGTCCCCAGTCCCATAAACACAGACCGACCGCC 1771934 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || |||||| | ||| | || || | ||||| || || | || | Sbjct 1771933 GGTGGGTTCCAGAGCAAGGTGCGTAAGGTGCACCCCTACTGACGTCTCCCTCATGGTTTT 1771874 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| || | |||||| || || |||||||||| ||| | ||| || Sbjct 1771873 GCCACTTGACCAGCCTGGCGATGGCAGTCATGTCGGAGATGTGAAACTTGGGGTGGTAGG 1771814 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 ||| | ||| || | | || | ||||| |||||||||||||| || |||||||||| Sbjct 1771813 GAATAGAACCCGGCATCCACGGTGTGCGCTGCAGGGTGGCCCACAGATGCTCGTCGGGGC 1771754 Query 160360 TGTACGTGTCCTT 160372 | || ||||| || Sbjct 1771753 TATAGGTGTCTTT 1771741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577135582583640