Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq694 120 5e-22 seq517 111 3e-19 seq695 105 1e-17 seq101 91.5 3e-13 >seq694 Length=814564 Score = 120 bits (132), Expect = 5e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCT-CTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 || ||||| | || | || |||| ||| | || ||||| || || || | ||| || Sbjct 212171 ACAAGATGAAGAGTGGACTACTTTTGAA-TGTTGTAGTCAGACAAAGTACGTCCATCTTC 212229 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | ||| || || ||||| |||| |||||| ||||||||||| |||||||| ||||| || Sbjct 212230 CAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 212289 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || |||| |||| |||| || ||||| || | ||||| || ||||| || || || Sbjct 212290 AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTT 212349 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || ||||| Sbjct 212350 CCCCGTTAGGGTTTTCACGAAAATCTGCAT 212379 >seq517 Length=1171097 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | |||||| ||||||||||| |||||||| || Sbjct 1142569 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 1142510 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || ||||| || | ||||| || ||||| || Sbjct 1142509 ATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGAT 1142450 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 1142449 GGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1142414 >seq695 Length=815165 Score = 105 bits (116), Expect = 1e-17 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 16892 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 16833 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | | | || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 16832 AGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 16773 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || ||||| || || || Sbjct 16772 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTC 16713 Query 193332 CCTGTTAGCGTTTT-TACAAATATTTGCAT 193360 || ||||| ||||| || || || ||||| Sbjct 16712 CCCGTTAGGGTTTTCAACGAAAATCTGCAT 16683 >seq101 Length=4626942 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| || || |||||||||| || | |||||| || || || || Sbjct 1982749 ATGCCACCTCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAATCA 1982808 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || ||||||||||| | ||||| || ||||| Sbjct 1982809 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGG 1982868 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || |||| || | |||| || || ||| | || Sbjct 1982869 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGCTGGGTTCC 1982928 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| || || || || || || || || || || ||||| Sbjct 1982929 ACTTCCAGGGTTATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899524073814480