Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq26 113 8e-20 seq101 89.7 9e-13 >seq26 Length=7528108 Score = 113 bits (124), Expect = 8e-20 Identities = 170/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | || | ||| | ||| || ||| || Sbjct 6810825 TTTCTTAGCACCACCACGAAGTCTCAACACAAGCTGAAGAGTGGACTCCTTTTGAATGTT 6810766 Query 171893 ATAATCTGATAAAGAT---CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTG 171949 || || || |||| | | | || |||| ||| || |||||||| || | ||||| Sbjct 6810765 GTAGTCAGACAAAGTAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTG 6810706 Query 171950 TTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATC 172009 || || || || |||||||| ||||| || || || |||||||| ||| ||||| Sbjct 6810705 CTGATCGGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATC 6810646 Query 172010 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || | ||||| ||||| || || |||| ||||| |||||||||||||| Sbjct 6810645 CGAGGGTTCAACCTTGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCATGAATATCTGCAT 6810586 Query 172070 T 172070 | Sbjct 6810585 T 6810585 >seq101 Length=4626942 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| || || || | || | || | ||| | |||||| || || ||||| || Sbjct 1982296 CCACCCCTCAGACGAAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1982355 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || |||| || || ||||||||||| | ||||| |||||||| || Sbjct 1982356 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982415 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || |||||||| || || || ||||| || ||||| | |||||| Sbjct 1982416 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCTACT 1982475 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| || || || | || || | ||| |||||||| Sbjct 1982476 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905004879736200