Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2173 104 7e-17
seq2149 87.8 5e-12
seq150 86.0 2e-11
seq97 84.2 6e-11
>seq2173
Length=34433
Score = 104 bits (114), Expect = 7e-17
Identities = 225/334 (67%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA-ATTTTGTC 289078
||||||| | | | || || || ||||||||||| || | || ||||| | || |
Sbjct 25291 CCTTTTTCCAGCTAATGCGTCTATCTCGTCAATGAAGATTATGCAAGGAGATAACTTCT- 25349
Query 289079 TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138
| || | |||| || ||||| || || |||||||| || ||| |||| || |||
Sbjct 25350 TAGCCTTCTCAAACAACTCTCTAACTCGTTTTGCTCCAACCCCGACAAACATATCATCAA 25409
Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198
| || | || ||| | ||| | ||||| | ||| || | || || | || |
Sbjct 25410 AGCTAGCTCCTGAAGCTTCTAAGAAGGGAACATTAGATTCTCCCGACACCGCTTTAGCTA 25469
Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258
||||||||||||| || || || ||||| | | | ||| || || || | | ||||||
Sbjct 25470 GAAGTGTCTTACCAGTCCCTGGAGGTCCATAAAGGATAACCCCTTTAGGAATTCTTGCCC 25529
Query 289259 CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318
| || ||| || | ||| || || | ||| |||||||| ||||| | || | ||
Sbjct 25530 CCATTGAAGCATACTTTTTAGGTCTTTTAAGAAAATCTACAATCTCCTCTAACTCTTCTT 25589
Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352
|| |||| | | |||||||||||| ||||||
Sbjct 25590 TTTCCTCTTTAATTCCTGCTACATCTTTAAAAGT 25623
>seq2149
Length=36755
Score = 87.8 bits (96), Expect = 5e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 408946 TCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTC 409005
|| |||| ||||||||||||||| | ||||||||||||| || |||||||||||||| |
Sbjct 5237 TCCATTAGCTCAGTTGGTTAGAGCATTGGTCTTATGAGCCAAAGGTCGTGGGTTCGAGAC 5296
Query 409006 CCACATAGAACATTTT 409021
|||||| || || |||
Sbjct 5297 CCACATGGATCACTTT 5312
>seq150
Length=4781790
Score = 86.0 bits (94), Expect = 2e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679
|| || || || || || || || || | ||||| ||||| || |||||||| | |||
Sbjct 2554462 GTCTTGACGGCGGTGTCGATGAGCCCCTCGCGACCCCCCATGGCGTGGAAGAAGAACTCG 2554521
Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739
||| || || | | ||||| |||| ||||| || || ||| ||| || |
Sbjct 2554522 GTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCCCGGCTCTCAGGCCCATAG 2554581
Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799
||| |||| | ||||| |||||||||| || || | || | ||||| || || ||
Sbjct 2554582 TCGTCCTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAACCCAAACGGGATCCGTTTCCCT 2554641
Query 302800 TCAACGTTCTGCTGTCC 302816
|| ||||||||||||||
Sbjct 2554642 TCCACGTTCTGCTGTCC 2554658
>seq97
Length=4628243
Score = 84.2 bits (92), Expect = 6e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946
||| | || ||||| || || ||||| ||| | | ||| ||||| || ||||||
Sbjct 333816 GCTTCACCTGAGGACATTAAAAAGGCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 333757
Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006
||||||||||| ||||||| ||| || ||| ||||||||||| | || | || |||
Sbjct 333756 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 333697
Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030
|| | || ||||||| ||||||
Sbjct 333696 GAGGTATTATCAAATAATGAAAAA 333673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471599058543493
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |