Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2173 104 7e-17 seq2149 87.8 5e-12 seq150 86.0 2e-11 seq97 84.2 6e-11 >seq2173 Length=34433 Score = 104 bits (114), Expect = 7e-17 Identities = 225/334 (67%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA-ATTTTGTC 289078 ||||||| | | | || || || ||||||||||| || | || ||||| | || | Sbjct 25291 CCTTTTTCCAGCTAATGCGTCTATCTCGTCAATGAAGATTATGCAAGGAGATAACTTCT- 25349 Query 289079 TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 | || | |||| || ||||| || || |||||||| || ||| |||| || ||| Sbjct 25350 TAGCCTTCTCAAACAACTCTCTAACTCGTTTTGCTCCAACCCCGACAAACATATCATCAA 25409 Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 | || | || ||| | ||| | ||||| | ||| || | || || | || | Sbjct 25410 AGCTAGCTCCTGAAGCTTCTAAGAAGGGAACATTAGATTCTCCCGACACCGCTTTAGCTA 25469 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 ||||||||||||| || || || ||||| | | | ||| || || || | | |||||| Sbjct 25470 GAAGTGTCTTACCAGTCCCTGGAGGTCCATAAAGGATAACCCCTTTAGGAATTCTTGCCC 25529 Query 289259 CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | || ||| || | ||| || || | ||| |||||||| ||||| | || | || Sbjct 25530 CCATTGAAGCATACTTTTTAGGTCTTTTAAGAAAATCTACAATCTCCTCTAACTCTTCTT 25589 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| | | |||||||||||| |||||| Sbjct 25590 TTTCCTCTTTAATTCCTGCTACATCTTTAAAAGT 25623 >seq2149 Length=36755 Score = 87.8 bits (96), Expect = 5e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 408946 TCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTC 409005 || |||| ||||||||||||||| | ||||||||||||| || |||||||||||||| | Sbjct 5237 TCCATTAGCTCAGTTGGTTAGAGCATTGGTCTTATGAGCCAAAGGTCGTGGGTTCGAGAC 5296 Query 409006 CCACATAGAACATTTT 409021 |||||| || || ||| Sbjct 5297 CCACATGGATCACTTT 5312 >seq150 Length=4781790 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || || || || || || | ||||| ||||| || |||||||| | ||| Sbjct 2554462 GTCTTGACGGCGGTGTCGATGAGCCCCTCGCGACCCCCCATGGCGTGGAAGAAGAACTCG 2554521 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 ||| || || | | ||||| |||| ||||| || || ||| ||| || | Sbjct 2554522 GTGGGTGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCCCGGCTCTCAGGCCCATAG 2554581 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 ||| |||| | ||||| |||||||||| || || | || | ||||| || || || Sbjct 2554582 TCGTCCTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAACCCAAACGGGATCCGTTTCCCT 2554641 Query 302800 TCAACGTTCTGCTGTCC 302816 || |||||||||||||| Sbjct 2554642 TCCACGTTCTGCTGTCC 2554658 >seq97 Length=4628243 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||||| ||| | | ||| ||||| || |||||| Sbjct 333816 GCTTCACCTGAGGACATTAAAAAGGCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 333757 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 333756 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 333697 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 || | || ||||||| |||||| Sbjct 333696 GAGGTATTATCAAATAATGAAAAA 333673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471599058543493