Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq26 125 6e-24 seq695 122 8e-23 seq292 120 3e-22 seq694 114 1e-20 seq56 114 1e-20 seq108 104 2e-17 seq101 96.9 3e-15 seq376 95.1 1e-14 seq1820 93.3 4e-14 >seq26 Length=7528108 Score = 125 bits (138), Expect = 6e-24 Identities = 166/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || || ||||| ||||| || || || || || ||| | || ||| || | Sbjct 6810586 ATGCAGATATTCATGAAAACCCTAACGGGGAAGACCATCACTCTCAAGGTTGAACCCTCG 6810645 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| ||||| || || || |||||||| ||||||||||| Sbjct 6810646 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAG 6810705 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT---TCGAGAAACATGTCAGATTAT 24880 || | |||||||||| || || || ||||| ||| | | | |||| || || Sbjct 6810706 CAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTACTTTGTCTGACTAC 6810765 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || || | |||||| || | || || || Sbjct 6810766 AACATTCAAAAGGAGTCCACTCTTCAGCTTGTGTTGAGACTTCGTGGTGG 6810815 >seq695 Length=815165 Score = 122 bits (134), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATT-AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||||| || || ||||| ||||| || || || || || ||||| || ||| || Sbjct 16682 GATGCAGATTTTCGTTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTTGAACCCT 16741 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || ||| |||||| ||||| ||||| || || || |||||||| ||||| |||| Sbjct 16742 CGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATC 16801 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | |||||||||| || || | ||||| ||| | | |||| || || | Sbjct 16802 AGCAGAGACTGATCTTTGCTGGCAAGCCACTGGAAGATGGACGTACTTTGTCTGACTACA 16861 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||||| || || || || | |||||| || | || || || Sbjct 16862 ACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 16910 >seq292 Length=3256830 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 1957968 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 1957909 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| |||| | ||| |||||||| || || || || || ||||| | Sbjct 1957908 TGACACCATTGAGAACGTTAAAGCCAAA-ATCCAAGATAAGGAGGGCATCCCCCCCGACC 1957850 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| |||| ||||| || ||||||||||| ||| | | |||| ||||| | Sbjct 1957849 AGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGCACTCTGTCTGATTACA 1957790 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || || || || || || || ||||||||| | || | || || ||| Sbjct 1957789 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTCCGGGGTGGC 1957740 >seq694 Length=814564 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| ||||| || || || || || || || || ||| || | Sbjct 212380 GATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTTGAGGTTGAACCCTC 212321 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||| || || || |||||||| ||||| ||||| Sbjct 212320 GGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCA 212261 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || || ||||| ||| | | |||| || || || Sbjct 212260 GCAGAGACTAATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 212201 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||| | || || || || | |||||| || | || || || Sbjct 212200 CATTCAAAAGTAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 212153 >seq56 Length=5723395 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | |||||||| || || || || || || || || Sbjct 4239841 ACAATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 4239782 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| |||||||| || || || || || Sbjct 4239781 AGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGAC 4239722 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| |||||||||||||| ||| | | | | |||| || || Sbjct 4239721 CAGCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 4239662 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || ||||| || || || ||| ||||| Sbjct 4239661 AACATCCAGAAGGAGTCCACGCTGCACCTGGTG 4239629 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || ||| Sbjct 4239154 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239095 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||| ||||| || || || || || || Sbjct 4239094 GACACCATCGAGAACGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAG 4239035 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| |||||||||||||| ||| | | | | |||| || || ||| Sbjct 4239034 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 4238975 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || |||| ||| | || || Sbjct 4238974 ATCCAGAAGGAGTCCACTCTGCACCTCGTCCTGCGCTTGAGGGGCGG 4238928 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || ||| Sbjct 4239610 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239551 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || || || || Sbjct 4239550 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 4239491 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| |||||||||||||| ||| | | | | |||| || || ||| Sbjct 4239490 CAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 4239431 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||| ||||| Sbjct 4239430 ATCCAGAAGGAGTCCACGCTGCACCTGGTG 4239401 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || ||| Sbjct 4239382 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239323 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || || || || Sbjct 4239322 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 4239263 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| |||||||||||||| ||| | | | | |||| || || || Sbjct 4239262 CAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAT 4239203 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||| ||||| Sbjct 4239202 ATCCAGAAGGAGTCCACTCTGCACCTGGTG 4239173 >seq108 Length=4373546 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || || || || || || || || | ||| || | Sbjct 1070663 GATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACTCTTGAGGCTGAATCCTC 1070604 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | |||||||| ||||| |||||||| || || |||||||| ||||| |||| Sbjct 1070603 AGATAGAGTAGAAAACGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTAATCA 1070544 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || || |||| ||| ||| ||| || || | Sbjct 1070543 GCAGAGATTGATCTTGGCTGGCAAGCAACTGGCAGATGGACGAACTCTGTGGGACTACAG 1070484 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| | || || || | |||||| || Sbjct 1070483 CATTCAAAAGGAGGCCACTCTTCATCTTGTGTTGAGA 1070447 >seq101 Length=4626942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| ||| ||| | Sbjct 1982978 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATAACCCTGGAAGTGGAACCCAGC 1982919 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || || || || || || || || || Sbjct 1982918 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982859 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || |||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 1982858 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982799 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || || || || || |||| |||| || | || ||| Sbjct 1982798 ATCCAAAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGAGGTGGC 1982751 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || |||||||| ||| Sbjct 1982522 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1982463 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||||| || || || || || || || || Sbjct 1982462 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAG 1982403 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || |||||||| ||| | | | || ||||| ||| Sbjct 1982402 CAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982343 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 1982342 ATCCAGAAAGAGTCGACTCTCCACCTGGT 1982314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| ||| ||| Sbjct 1982750 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 1982691 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || || || || || || || || || Sbjct 1982690 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 1982631 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || |||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 1982630 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1982571 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || |||| |||| || | || ||| Sbjct 1982570 ATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCCTGAGGGGTGGC 1982523 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 1983206 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGT 1983147 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || || || || || || || || Sbjct 1983146 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCTGACCAG 1983087 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || |||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 1983086 CAGAGGCTTATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1983027 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || |||| |||| || | || ||| Sbjct 1983026 ATCCAGAAAGAGTCCACCCTGCATCTGGTCCTGCGCCTGAGGGGTGGC 1982979 >seq376 Length=1707047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || | || || || || || ||||| | | ||| Sbjct 762523 GATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCGAGGCCAAGCCCAG 762582 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || |||| ||| | ||| |||| |||||| || || || ||| || | Sbjct 762583 CGACACCATTGAGAACGTCAAAGCTAAA-ATCCGAGACAACGAGGGCATCTTTCCTGACC 762641 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTAT 24880 |||| ||| ||| ||||||| | |||||||| || | | | | || ||| |||||| Sbjct 762642 AACAGCGTCTGACCTTTGCCAGCAAACAGCTAGAACA-TGGCCACACTCTGTTAGATTAC 762700 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||| || || || || || ||||||||| Sbjct 762701 AATATTCAGAAAGAGTCCACCCTGCACTTGGTG 762733 >seq1820 Length=90317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || || || ||| ||| Sbjct 66755 ATGCAGATTTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGT 66814 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | ||||| || || ||||||||||| ||||| | || | ||||| || Sbjct 66815 GACACAATCGAAACTGTGAAGGCCAAGATCCAAGATAAAGAGTGCATCCGCCCCGACCAG 66874 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 66875 CAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 66934 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 | || || || ||||| || ||| |||| Sbjct 66935 CTCCAGAAAGAGTCGACTCTCCACCTGGT 66963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449832426708920