Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq56 91.5 1e-13 >seq56 Length=5723395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||| ||| | || |||| | | Sbjct 4239610 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239551 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || ||||| ||| | ||| || ||| Sbjct 4239550 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 4239491 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | |||||| ||||||||||| || | || || | ||||||||| Sbjct 4239490 CAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 4239431 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| ||||| Sbjct 4239430 ATCCAGAAGGAGTCCACGCTGCACCTGGTG 4239401 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || || || || || ||||| ||| | || |||| | | Sbjct 4239839 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 4239780 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| || ||||| ||| | ||| || || Sbjct 4239779 TGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCA 4239720 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | |||||| ||||||||||| || | || || | |||||||| Sbjct 4239719 GCAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4239660 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| ||| ||||| ||||| Sbjct 4239659 CATCCAGAAGGAGTCCACGCTGCACCTGGTG 4239629 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||| ||| | || |||| | | Sbjct 4239382 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4239323 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || ||||| ||| | ||| || ||| Sbjct 4239322 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGACCAG 4239263 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | |||||| ||||||||||| || | || || | |||||||| Sbjct 4239262 CAGAGGCTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAT 4239203 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 4239202 ATCCAGAAGGAGTCCACTCTGCACCTGGTG 4239173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398820462266821