Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq694 122 7e-23
seq101 122 7e-23
seq695 120 2e-22
seq26 109 4e-19
seq56 100 2e-16
seq1820 91.5 1e-13
>seq694
Length=814564
Score = 122 bits (134), Expect = 7e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| | ||||||||||| || || | | || || |||
Sbjct 212167 CAACACAAGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 212226
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | || | ||| |||||||| || ||||| || || || ||
Sbjct 212227 TTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 212286
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| |||||| || || || |||| || |||||||| || |
Sbjct 212287 CTG-AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGG 212345
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || |||| |||||| || || ||||||||
Sbjct 212346 TCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 212379
>seq101
Length=4626942
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| ||||| |||| ||| || ||||| ||||| || ||||| ||||| | |
Sbjct 1982980 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1983039
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||| ||| | || | || ||||| || || ||
Sbjct 1983040 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1983099
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| || ||||| | || || ||| |||| | |||||| |||| ||
Sbjct 1983100 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACC 1983159
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || |||||||| | ||| || || || |||||||||||
Sbjct 1983160 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1983209
>seq695
Length=815165
Score = 120 bits (132), Expect = 2e-22
Identities = 158/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || || |||
Sbjct 16896 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 16837
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||| | ||||||||| | |||| ||| |||||||| || ||||| || || || ||
Sbjct 16836 TTCCAGTGGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 16777
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| |||||| || || || |||| || || ||||| || |
Sbjct 16776 CTG-AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGG 16718
Query 29753 TTTTGCCAGTTAAGGTTTT-AACAAATATCTGCAT 29786
| || || |||| |||||| ||| || ||||||||
Sbjct 16717 TCTTCCCCGTTAGGGTTTTCAACGAAAATCTGCAT 16683
>seq26
Length=7528108
Score = 109 bits (120), Expect = 4e-19
Identities = 152/208 (73%), Gaps = 5/208 (2%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATG--GTGCGAGAATCATCGAGT 29640
||||| ||||| || ||||||||||| || || | ||| | || | ||| || |||
Sbjct 6810791 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGTACATCCATCTTCCAGT 6810732
Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700
|| ||||||||| | |||| || |||||||| || ||||| || || || || || |||
Sbjct 6810731 TGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTTATCCTG-AAT 6810673
Query 29701 TTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759
|| | || ||| |||||| || || || |||| || | ||||| || || || ||
Sbjct 6810672 CTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTCCC 6810613
Query 29760 AGTTAAGGTTTTAACAAATATCTGCATT 29787
|||| |||||| | ||||||||||||
Sbjct 6810612 CGTTAGGGTTTTCATGAATATCTGCATT 6810585
>seq56
Length=5723395
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| || |||||||| || || || ||||| || || | | |||||| |
Sbjct 4239396 CGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4239455
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || ||||| || ||| | |||| || ||||| || || || || |||||||||
Sbjct 4239456 TCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4239515
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || ||||| | || | |||||| | || || || || || ||
Sbjct 4239516 TCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4239575
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || ||||| || || || ||||||||
Sbjct 4239576 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239610
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| || |||||||| || || || ||||| || || | | |||||| |
Sbjct 4239624 CGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4239683
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || ||||| || ||| | |||| || ||||| || || || || |||||||||
Sbjct 4239684 TCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4239743
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || ||||| | || | |||||| | || || || || || ||
Sbjct 4239744 TCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4239803
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || || || ||||| || || || |||||||||
Sbjct 4239804 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 4239839
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| || || ||||| || || || || || || || | | |||||| |
Sbjct 4239168 CGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCA 4239227
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || ||||| || ||| | |||| || ||||| || || || || |||||||||
Sbjct 4239228 TCTTCCAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4239287
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || ||||| | || | |||||| | || || || || || ||
Sbjct 4239288 TCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 4239347
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || ||||| || || || ||||||||
Sbjct 4239348 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4239382
>seq1820
Length=90317
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| |||| || || || || ||||| || | ||| ||||| | || ||||| |||
Sbjct 66966 AGTACCAGGTGGAGAGTCGACTCTTTCTGGAGGTTGTAATCAGAAAGAGTGCGGCCATCT 66907
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| || || ||||| ||| | || | || ||||| || || | || | |||||| |||
Sbjct 66906 TCCAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCGGGGCGGATGCACTCTTTATCT 66847
Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754
|| | || || |||||||| | |||||| |||| || || || || || ||
Sbjct 66846 TGGATCTTGGCCTTCACAGTTTCGATTGTGTCACTGGGTTCCACCTCCAGGGTGATGGTC 66787
Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|||||||| | || || || || |||||||||||
Sbjct 66786 TTGCCAGTCAGTGTCTTCACGAAAATCTGCATTTT 66752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385164791279049
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |