Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq56 102 7e-17 >seq56 Length=5723395 Score = 102 bits (112), Expect = 7e-17 Identities = 466/713 (65%), Gaps = 67/713 (9%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| |||||||| |||||||||| ||| || |||| || | | | |||||||| Sbjct 2199567 CCACAGCCCTAGCTTCAGGTCTGAAAA-GAGGAGACTTCTTCTGGGGGCAACGGAAGGCA 2199625 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT- 1189 ||||||||||| ||| ||| ||||||| |||||||||| || ||||||| |||| Sbjct 2199626 TTTTAAAGAAACGGCCCTCCAAAGAAATCTGTAGGGCACTTACGTAGTCTTCCAAAAGTC 2199685 Query 1190 --TTTGAAAATGAGAACTGTAGTTC---TGTGATT------ACAGCTGATTGTATGTCCC 1238 || || | || ||||| ||| ||||| ||| | | || | || Sbjct 2199686 CCTTCGACA---AGGGCTGTAATTCCAAGATGATTTTCCGAACATCACTTGGTTGGAGCC 2199742 Query 1239 G-TGGTAGTGGATGGC-CGTGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAG 1296 | ||| | || | | ||||||||| || | | | | ||||||||||||||||| Sbjct 2199743 GATGG--GGGGGCGCCGCGTGGGAGGTAGGCGAAGTTTCCATGCAGCAGAGCAGGAACAG 2199800 Query 1297 GGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACAC-CCCCACCTGCCCCA 1355 ||||| || | | | || | | | ||| |||| | || | | | | | | Sbjct 2199801 GGCAAACCTGGCGGGTCCTGGAGAGAGAGAACGATGCTGTGAGACACAGAATCAGACAC- 2199859 Query 1356 TACCTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCC-CCATCCAGT 1414 ||| || |||| |||| ||||||| |||| || | | ||| ||| ||| Sbjct 2199860 CGCCTGCAC--GCCCCAGCTGCCACCACC---GCTG-GCTG----GCGCCTCCA--GAGT 2199907 Query 1415 CTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGA-CCT 1473 ||| | || | ||| ||| || | ||| |||| || || ||| | |||| || Sbjct 2199908 CTTGCCCTCTTTCTGAGGAGACAAGGCCGTGCCCA--AGGAT--GGGGCCGCAGGACCCG 2199963 Query 1474 ATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAG-GCCGCC-GCTTTGGCAACA 1531 || | |||||| | |||| | || || ||||| ||| | | ||| |||| ||||||| Sbjct 2199964 ATAG-TACCTGTGTGGGAGAGCATGGC--GAGAGGGCGTGCGTGGCCTGCTTCGGCAACA 2200020 Query 1532 GCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGT-- 1589 | || ||| |||||||||||| || | | |||| |||||||||||| | | Sbjct 2200021 AC--CTCCAGTCAGATGTGCTCGCCATGGTCCTCGGGA--GATATATAAAGGGCCACTCA 2200076 Query 1590 -TGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CA 1637 | | ||| | || || ||||||| | ||| ||||| || || Sbjct 2200077 CGGGGAAAAGGTATGATCAACGTCCCGCCCATTGCAAAATCATTGCTCAGCTTTTCTCCA 2200136 Query 1638 GAAAACATTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA---A 1694 ||||||| ||||| || ||| | | |||| ||| || |||| ||||||| Sbjct 2200137 GAAAACA-CTCAAAATTCTGCGGCCCAAGGTTGGGCGAAATCAGGGCTGGAAGGAAGTGC 2200195 Query 1695 TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747 ||| |||||||| ||| |||||||||||||||| || | || | |||||| || Sbjct 2200196 TGAGGTTACCCTCAAGGTGGGCAGATGCTTGACTCAGTACAGACACACACAGG 2200248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438496469102000