Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq56 102 7e-17
>seq56
Length=5723395
Score = 102 bits (112), Expect = 7e-17
Identities = 466/713 (65%), Gaps = 67/713 (9%)
Strand=Plus/Plus
Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130
||||||| |||||||| |||||||||| ||| || |||| || | | | ||||||||
Sbjct 2199567 CCACAGCCCTAGCTTCAGGTCTGAAAA-GAGGAGACTTCTTCTGGGGGCAACGGAAGGCA 2199625
Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT- 1189
||||||||||| ||| ||| ||||||| |||||||||| || ||||||| ||||
Sbjct 2199626 TTTTAAAGAAACGGCCCTCCAAAGAAATCTGTAGGGCACTTACGTAGTCTTCCAAAAGTC 2199685
Query 1190 --TTTGAAAATGAGAACTGTAGTTC---TGTGATT------ACAGCTGATTGTATGTCCC 1238
|| || | || ||||| ||| ||||| ||| | | || | ||
Sbjct 2199686 CCTTCGACA---AGGGCTGTAATTCCAAGATGATTTTCCGAACATCACTTGGTTGGAGCC 2199742
Query 1239 G-TGGTAGTGGATGGC-CGTGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAG 1296
| ||| | || | | ||||||||| || | | | | |||||||||||||||||
Sbjct 2199743 GATGG--GGGGGCGCCGCGTGGGAGGTAGGCGAAGTTTCCATGCAGCAGAGCAGGAACAG 2199800
Query 1297 GGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACAC-CCCCACCTGCCCCA 1355
||||| || | | | || | | | ||| |||| | || | | | | | |
Sbjct 2199801 GGCAAACCTGGCGGGTCCTGGAGAGAGAGAACGATGCTGTGAGACACAGAATCAGACAC- 2199859
Query 1356 TACCTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCC-CCATCCAGT 1414
||| || |||| |||| ||||||| |||| || | | ||| ||| |||
Sbjct 2199860 CGCCTGCAC--GCCCCAGCTGCCACCACC---GCTG-GCTG----GCGCCTCCA--GAGT 2199907
Query 1415 CTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGA-CCT 1473
||| | || | ||| ||| || | ||| |||| || || ||| | |||| ||
Sbjct 2199908 CTTGCCCTCTTTCTGAGGAGACAAGGCCGTGCCCA--AGGAT--GGGGCCGCAGGACCCG 2199963
Query 1474 ATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAG-GCCGCC-GCTTTGGCAACA 1531
|| | |||||| | |||| | || || ||||| ||| | | ||| |||| |||||||
Sbjct 2199964 ATAG-TACCTGTGTGGGAGAGCATGGC--GAGAGGGCGTGCGTGGCCTGCTTCGGCAACA 2200020
Query 1532 GCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGT-- 1589
| || ||| |||||||||||| || | | |||| |||||||||||| | |
Sbjct 2200021 AC--CTCCAGTCAGATGTGCTCGCCATGGTCCTCGGGA--GATATATAAAGGGCCACTCA 2200076
Query 1590 -TGTAAGGAGGAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACT-----------CA 1637
| | ||| | || || ||||||| | ||| ||||| || ||
Sbjct 2200077 CGGGGAAAAGGTATGATCAACGTCCCGCCCATTGCAAAATCATTGCTCAGCTTTTCTCCA 2200136
Query 1638 GAAAACATTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA---A 1694
||||||| ||||| || ||| | | |||| ||| || |||| |||||||
Sbjct 2200137 GAAAACA-CTCAAAATTCTGCGGCCCAAGGTTGGGCGAAATCAGGGCTGGAAGGAAGTGC 2200195
Query 1695 TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747
||| |||||||| ||| |||||||||||||||| || | || | |||||| ||
Sbjct 2200196 TGAGGTTACCCTCAAGGTGGGCAGATGCTTGACTCAGTACAGACACACACAGG 2200248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438496469102000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |