Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq101 170 4e-37 seq694 150 4e-31 seq292 149 1e-30 seq517 141 2e-28 seq695 140 6e-28 seq26 138 2e-27 seq84 118 2e-21 seq749 105 1e-17 seq216 105 1e-17 seq143 104 5e-17 seq108 104 5e-17 seq37 91.5 3e-13 seq12 89.7 1e-12 >seq101 Length=4626942 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| ||||| | ||| ||||| || |||||||| || || |||||||| Sbjct 1982296 CCACCCCTCAGACGAAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAA 1982355 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || |||||||| || || || || || || || || Sbjct 1982356 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1982415 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || || |||||||| || |||||| | || |||||| Sbjct 1982416 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCTACT 1982475 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 1982476 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1982522 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | ||||| || || |||||||| || || |||||||| Sbjct 1982980 CCACCCCTCAGGCGCAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 1983039 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || ||||| || || || || || || || || Sbjct 1983040 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCAGGGGGG 1983099 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || || |||||||| || || ||| | ||||| || Sbjct 1983100 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGTTCCACC 1983159 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| |||| ||||| || || ||||||||| Sbjct 1983160 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 1983207 >seq694 Length=814564 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || | || || || || || ||||| | | | | || ||||| ||||| Sbjct 212177 TGAAGAGTGGACTACTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 212236 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct 212237 TTGCCAGCAAAGATTAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTG 212296 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || || | ||| || ||||| || || Sbjct 212297 GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCCGTT 212356 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 212357 AGGGTTTTCACGAAAATCTGCAT 212379 >seq292 Length=3256830 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || |||||||| || || |||||||| ||||| |||||||| ||| | | || Sbjct 1957753 CGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGACAGAGTGCGGCCA 1957812 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || ||||| || ||||| || || | || || || || || || || |||||| Sbjct 1957813 TCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTA 1957872 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| || || ||||| || ||| | || || || || | || || Sbjct 1957873 TCTTGGATTTTGGCTTTAACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1957932 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| |||||||| Sbjct 1957933 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1957967 >seq517 Length=1171097 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || | || || | ||| | | | | || ||||| ||||| Sbjct 1142616 TGAAGAGTGGACTCCTTTTGAAAGTTGTAGTTAGACAAAGTACGTCCATCTTCCAGTTGC 1142557 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct 1142556 TTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTG 1142497 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || || | ||| || ||||| || || Sbjct 1142496 GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTT 1142437 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 1142436 AGGGTTTTCACGAAAATCTGCAT 1142414 >seq695 Length=815165 Score = 140 bits (154), Expect = 6e-28 Identities = 154/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | | || ||||| ||| | Sbjct 16886 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTGGC 16827 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct 16826 TTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTG 16767 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || || | ||| || ||||| || || Sbjct 16766 GCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTT 16707 Query 82788 AACGTCTT-TACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 16706 AGGGTTTTCAACGAAAATCTGCAT 16683 >seq26 Length=7528108 Score = 138 bits (152), Expect = 2e-27 Identities = 155/207 (75%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTAC---CGTCTTCTAGT 82664 || ||||| || || || || || || || ||||| | | | ||| | ||||| ||| Sbjct 6810791 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAGTACATCCATCTTCCAGT 6810732 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || ||||||||||| || || || ||||| ||||| |||||||||||||| |||||| Sbjct 6810731 TGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTTATCCTGAATC 6810672 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||||| || ||||| ||||| || | | ||| || ||||| || Sbjct 6810671 TTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTCCCC 6810612 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | || || | |||||||||||| Sbjct 6810611 GTTAGGGTTTTCATGAATATCTGCATT 6810585 >seq84 Length=4826052 Score = 118 bits (130), Expect = 2e-21 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 ||| |||||||| | | | | ||||| |||||||| |||||||||| ||||| || Sbjct 1438951 TATCATCAGATAAAGTACGTCTATCTTCCAGTTGTTTGGCAGCAAAGATCAGTCTCTGCA 1439010 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 |||| ||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| Sbjct 1439011 GATCAGGAGGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCTATTGTATC 1439068 >seq749 Length=741069 Score = 105 bits (116), Expect = 1e-17 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || |||||| |||| ||||| | ||||| ||||| ||||||||| Sbjct 338030 CCATCTTCCAGTTGCTTGCCAGCACAGATCAGTCTCGGCTGATCAGGAGGAATTCCTTCC 337971 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| |||||||| || ||||||||||| || ||||| Sbjct 337970 TTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATC 337933 >seq216 Length=2856708 Score = 105 bits (116), Expect = 1e-17 Identities = 169/242 (70%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| | |||||| | ||||| || || |||||| | ||| | |||||| Sbjct 383035 TACCACCTCTCAGATACAGAACCAGGTGCAAGGTTGACTCTTTCCGGATACTGAAATCAG 383094 Query 82642 ATAGAATT---CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 | | | | | || ||||| || || || || |||||||| || |||| || | || Sbjct 383095 AAAAAGTGTGGCAGCCATCTTCCAGATGCTTGCCTGCAAAGATAAGCTTTTGCTGTTTTG 383154 Query 82699 -------GAGGT--ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 |||| || || || |||| ||||| || || || |||||||| || || | Sbjct 383155 TGTGGCAGAGGGTAATGCCCTCTCTATCCTGAATATTGGCCTTCACATTTTCGATGGTGT 383214 Query 82750 CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || |||| || | |||| | || ||||||| ||||| ||||||||||| || |||| Sbjct 383215 CACTAGGCTCCATCTCCAGGGCGATGGTCTTGCTAGTCAAGGTCTTTACAAAGATTTGCA 383274 Query 82810 TT 82811 || Sbjct 383275 TT 383276 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 || |||| | | ||||| ||||||||||| || ||| ||| | | |||||||| ||| Sbjct 382443 CCCCTCAGATGGAGAACCAAGTGCAGAGTTGACCCTTCCTGGA---TGTAATCAGAAAGA 382499 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | || ||||| || || | || |||||||| || || || || || || || || Sbjct 382500 GTGAGGCCATCTTCCAGCTGCCTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATG 382559 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||||| |||||||| ||||| || || ||||| Sbjct 382560 CCTTCTTTATCTTGGATCTTAGCCTTCACATT 382591 >seq143 Length=3665815 Score = 104 bits (114), Expect = 5e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671 |||| | ||||| || || || | ||||| ||| | | || |||| ||||| || | Sbjct 1819747 GAGTGAACTCTTTTTGAATGTTGTG-TCAGACAGAGTACGTCCATCTTTCAGTTGCTTGC 1819689 Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 ||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || | Sbjct 1819688 CAGAGAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCT 1819629 Query 82732 TTACATTTTCAATCGTATC 82750 ||||| |||| || ||||| Sbjct 1819628 TTACAGTTTCTATTGTATC 1819610 >seq108 Length=4373546 Score = 104 bits (114), Expect = 5e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| | || || || || | || || | ||| ||| || ||| | ||||| Sbjct 1070460 TGAAGAGTGGCCTCCTTTTGAATGCTGTAGTCCCACAGAGTTCGTCCATCTGCCAGTTGC 1070519 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| | ||| || |||| ||||| |||||||||||||| || ||||| Sbjct 1070520 TTGCCAGCCAAGATCAATCTCTGCTGATTAGGAGGAATTCCTTCCTTATCCTGGATCTTG 1070579 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || ||||| ||||| | |||| | ||| ||| | || | ||| || ||||| || || Sbjct 1070580 GCCTTTACGTTTTCTACTCTATC-TGAGGATTCAGCCTCAAGAGTGATGGTCTTCCCCGT 1070638 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||||||| Sbjct 1070639 AAGGGTTTTCACAAAAATCTGCAT 1070662 >seq37 Length=7442708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| ||||| || ||||| ||| | ||||| || ||||| |||| ||||||||| Sbjct 5921089 CCGTCTTCCAGTTGCTTGCCAGCCAAGTTCAGTCTCTGCTGATCACGAGGAATTCCTTCC 5921148 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTT 82740 || || |||||||| || |||||||||| Sbjct 5921149 TTGTCCTGAATCTTGGCCTTTACATTTT 5921176 >seq12 Length=8826349 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||| ||||| ||||||| || | || | ||||| ||||| || || Sbjct 5434144 TTCTCCAGCAAAAATTAGATAGTGTTGATGAGGCAGGATGTCCTCCTTGTCTTGGATTTT 5434085 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||| ||||| ||||| || ||| | || | || || | || || ||||||||||| Sbjct 5434084 GGCTTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGGGTGATGGTCTTGCCTGT 5434025 Query 82787 CAACGTCTTTACAAATATCTGC 82808 || ||||| ||||| |||||| Sbjct 5434024 CAGGGTCTTCACAAAGATCTGC 5434003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981681414308671